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Subject: Society for Mathematical Biology Digest

SMB Digest  November 18, 2015  Volume 15  Issue 46
ISSN 1086-6566

Editor: Ray Mejía ray(at)smb(dot)org

Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
http://www.smb.org/ .

Access the Bulletin of Mathematical Biology, the official journal of SMB, at
http://www.springer.com/11538 .

Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org .

Issue's Topics:
   CfA: Game Theoretical Modeling of Evolution in Structured Populations
   ToC: Bulletin of Mathematical Biology, Vol. 77, Issue 8
   Author Academy: how to write a good cover letter
   Postdoc Position: Modelling Neglected Tropical Diseases, U Notre Dame
   Postdoctoral Position: Center for Theoretical Biological Physics, Rice
   Visiting Assistant Professor: Mathematical Biology, Oregon State U
   Assistant Professor: Statistics, University of Missouri-Kansas
   Assistant Professor: Numerical Modeling of Hydrologic ..., Utah State
   Research Scientist: Computational Bioinformatics/Systems Biology
   SMBnet Reminders


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From: Catherine Crawley <ccrawley@nimbios.org>
Date: Mon, Nov 16, 2015 at 10:56 AM
Subject: CfA: Game Theoretical Modeling of Evolution in Structured Populations

The National Institute for Mathematical and Biological Synthesis (NIMBioS)
is now accepting applications for its Tutorial, "Game Theoretical Modeling
of Evolution in Structured Populations," to be held April 25-27, 2016,
at NIMBioS.

Objectives:  Participants will be introduced to the discrete graph
theory methods and models of structured population as well as classical
continuous models based on differential equations. They will learn how
to use such methods and/or build and analyze models in the context of the
tutorial's topics and will work in small groups to experience how to use
the methodology to describe, simulate, and analyze the relevant biological
systems. Participants will be exposed to software that implements the
mathematical methods, aids visualization, and facilitates computations and
analyses. Participants will learn how the tutorial materials may fit into
mathematics and biology courses or be used as an introduction to independent
studies or undergraduate research.

Location: NIMBioS at the University of Tennessee, Knoxville

Co-Organizers: Mark Broom, Mathematics, City Univ. London; Jonathan Rowell,
Mathematics and Statistics, Univ. of North Carolina, Greensboro; Jan Rychtar,
Mathematics and Statistics, Univ. of North Carolina, Greensboro; and Jeremy
Van Cleve, Biology, Univ. of Kentucky

For more information about the tutorial and a link to the online application
form, go to http://www.nimbios.org/tutorials/TT_gametheory

Participation in NIMBioS tutorials is by application only. Individuals with
a strong interest in the topic are encouraged to apply, and successful
applicants will be notified within two weeks after the application
deadline. If needed, financial support for travel, meals, and lodging is
available for tutorial attendees.

Application deadline: February 15, 2016

The National Institute for Mathematical and Biological Synthesis (NIMBioS)
(http://www.nimbios.org) brings together researchers from around the world
to collaborate across disciplinary boundaries to investigate solutions to
basic and applied problems in the life sciences. NIMBioS is sponsored by
the National Science Foundation, with additional support from The University
of Tennessee, Knoxville.


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From: Springer <springer@alerts.springer.com>
Date: Tue, Nov 10, 2015 at 5:31 PM
Subject: ToC: Bulletin of Mathematical Biology, Vol. 77, Issue 8

In this issue
http://link.springer.com/journal/11538/77/8?wt_mc=alerts.TOCjournals

Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold
Shock Response in Saccharomyces cerevisiae
Kam D. Dahlquist, Ben G. Fitzpatrick, Erika T. Camacho, Stephanie
D. Entzminger & Nathan C. Wanner
http://link.springer.com/article/10.1007/s11538-015-0092-6

A Mathematical Model of the Honeybee-Varroa destructor-Acute Bee Paralysis
Virus System with Seasonal Effects
Vardayani Ratti, Peter G. Kevan & Hermann J. Eberl
http://link.springer.com/article/10.1007/s11538-015-0093-5

The Baroreflex Mechanism Revisited
A. Rabinovitch, M. Friedman, D. Braunstein, Y. Biton & I. Aviram
http://link.springer.com/article/10.1007/s11538-015-0094-4

Simple Approximations for Epidemics with Exponential and Fixed Infectious
Periods
A. C. Fowler & T. Déirdre Hollingsworth
http://link.springer.com/article/10.1007/s11538-015-0095-3

Identifying Mechanisms of Homeostatic Signaling in Fibroblast Differentiation
Hayley C. Warsinske, Shanna L. Ashley, Jennifer J. Linderman, Bethany
B. Moore & Denise E. Kirschner
http://link.springer.com/article/10.1007/s11538-015-0096-2

Patchy Invasion of Stage-Structured Alien Species with Short-Distance and
Long-Distance Dispersal
Luiz Alberto Díaz Rodrigues, Diomar Cristina Mistro, Elisa Regina Cara,
Natalia Petrovskaya & Sergei Petrovskii
http://link.springer.com/article/10.1007/s11538-015-0097-1

Identifiability Results for Several Classes of Linear Compartment Models
Nicolette Meshkat, Seth Sullivant & Marisa Eisenberg
http://link.springer.com/article/10.1007/s11538-015-0098-0


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From: Author Academy <springer@news.springer.com>
Date: Wed, Nov 11, 2015 at 9:01 PM
Subject: Author Academy: how to write a good cover letter

Springer
http://news.springer.com/re?l=D0In5ydavI6hds1vdI0

You can read this email online at
http://news.springer.com/re?l=D0In5ydavI6hds1vdI1


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From: Brajendra Kumar Singh <brajendra.singh@nd.edu>
Date: Thu, Nov 12, 2015 at 4:00 PM
Subject: Postdoc Position: Modelling Neglected Tropical Diseases, U Notre Dame

POST-DOCTORAL FELLOW POSITION in Mathematical and Computational Modelling of
Neglected Tropical Diseases

A Post-doctoral Research Fellow position is available immediately in
the interdisciplinary Global Epidemiology and Biostatistics Group led by
Prof. Edwin Michael at the University of Notre Dame in the Department of
Biological Sciences and the Eck Institute for Global Health, to develop new
mathematical and computational frameworks for modeling neglected vector-borne
macroparasitic infections, in partnership with IBM Healthcare Informatics,
IBM Haifa Research Labs, Israel.

Responsibilities: The successful candidate for the position must be proficient
in mathematical model construction and analysis using both analytical
and numerical methods, as well as have strong programming and computer
science skills. Our current work includes vector-borne microparasitic
and neglected macroparasitic models, and the successful candidate will
be expected to work with group members and faculty within the Department
of Biology, and at Applied Computational Mathematics and Statistics,
the Department of Computer Science and Engineering, and the Center for
Research Computing, in analyzing the dynamical properties and simulation
of these models. Knowledge and application of data discovery, mining, and
data-model assimilation methods will be important, as among key objectives
of our work is to apply models to diverse data across the world to improve
learning and understanding of disease dynamics, inform effective control and
eradication strategies, and guide development of new computing approaches to
efficient discovery of models, data and interventions.  The candidate will
have an opportunity to work with our computation partner, IBM Healthcare
Informatics, in developing a cognitive computational application based on
machine learning algorithms to implement these methods and tools. We are
looking for creative, self-motivated individuals with intellectual ability
and aptitude to pursue challenging, computationally and mathematically
complex problems in a fast paced research environment.

Qualifications: Suitable candidates should have completed a PhD or equivalent
degree in biomathematics, infectious disease population biology, theoretical
physics, or in computer science, with a research experience in mathematical
modelling of infectious disease transmission.

Qualified individuals should send in PDF format a cover letter, curriculum
vitae, statement of research interest, and three letters of reference to
the search committee chair, Dr. Edwin Michael at eigh@nd.edu. Review of
applications will begin immediately upon receipt of applications and continue
until suitable candidates are identified. For additional information about
working at the University of Notre Dame and various benefits available to
employees, please visit http://hr.nd.edu/employment/working_at_nd.shtml.


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From: Oleg Igoshin <igoshin@rice.edu>
Date: Tue, Nov 10, 2015 at 4:24 PM
Subject: Postdoctoral Position: Center for Theoretical Biological Physics, Rice

A postdoctoral position in theoretical biophysics and systems biology is
available at the Center for Theoretical Biological Physics (CTBP) at Rice
University, for a collaborative project between the labs of Ido Golding (CTBP
and Baylor college of Medicine, https://www.bcm.edu/research/labs/ido-golding)
and Oleg Igoshin (CTBP and Dept. of Bioengineering, Rice University,
http://igoshin.rice.edu/). We are looking for a motivated postdoctoral
fellow to work with Drs. Golding and Igoshin on understanding stochasticity
in cell-fate decisions.

BRIEF PROJECT DESCRIPTION:
Binary cell fate choices are a hallmark of biology, from simple bacteria
to a developing human embryo. Experimentally, cell decisions often appear
unpredictable, and this has been attributed to the inherent stochasticity
("noise") of biochemical processes. But an alternative hypothesis is that this
apparent randomness actually reflects the presence of "hidden variables". If
these variables were to be unveiled, the cell's behavior will be revealed to
be deterministic rather than stochastic. The Golding lab attempts to discover
these hidden variables by experimentally probing cell fate choices, and the
activity of the underlying gene networks, at the resolution of individual
cells and individual molecular events within the cell. The experiments are
performed in biological systems of increasing complexity, from bacteria to
mammals. The Igoshin lab specializes in theoretical and computational systems
biology, with emphasis on evolutionary design principles of biochemical and
gene-regulatory networks, in both bacteria and stem cells. In particular,
the lab has been interested in understanding the functional requirements of
cell-differentiation, and in building mathematical models of the networks that
fulfill these requirements. In this new collaboration, the two labs will work
together to understand how cell-fate decisions are driven by deterministic and
stochastic factors, both within the cell and from the external environment.

QUALIFICATIONS AND RESPONSIBILITIES:
PhD in science or engineering is required for this position. Candidates with
(1) training both in computational approaches and in biological sciences and
(2) publications in the field of theoretical biophysics or systems biology
are strongly preferred. Strong interest in interdisciplinary collaboration
and English proficiency are also expected. The successful applicant will be
responsible for developing analytical and computational models of stochastic
cell-fate decisions, based on and tightly coupled to the ongoing experimental
endeavors in Golding's lab.

ABOUT CTBP:
The Center for Theoretical Biophysics (CTBP, http://ctbp.rice.edu) is one of
ten Physics Frontiers Centers established by the National Science Foundation
Directorate for Mathematical and Physical Sciences. CTBP represents a
collaboration between researchers at Rice University, Baylor College of
Medicine and the University of Houston. CTBP encompasses a broad array of
research and training activities at the forefront of the biology-physics
interface. The center has an exceptional track record of cutting edge
research and of placing its alumni into academic positions in top US and
foreign schools.

ABOUT RICE, BAYLOR AND THE TEXAS MEDICAL CENTER:
Rice University is consistently ranked as one of the nation's best teaching
and research universities. Rice is committed to cutting edge interdisciplinary
biological research. It is a home to the Center for Theoretical Biological
Physics and a PhD Program in Systems, Synthetic and Physical Biology
(http://sspb.rice.edu). The Department of Bioengineering is ranked among the
nation's top 10 bioengineering undergraduate and graduate programs. Rice is
situated in the Museum District of Houston, Texas - the fourth largest city
in the US. Across the street from Rice campus, Baylor College of Medicine
is part of the Texas Medical Center, the largest medical center in the world.

CONDITIONS:
Rice University is an equal opportunity employer and offers competitive
postdoctoral salary and benefits. The position is open from December 1,
2015 until filled. The initial appointment is for 1 year with renewal upon
satisfactory performance.

APPLICATION PROCEDURE:
Applicants should submit their CV, contact information for 3 professional
references, and a short (less than 2 page) research statement justifying
their interest in the position to golding@bcm.edu and igoshin@rice.edu


----------------------------------------------------

From: <deleenhp@science.oregonstate.edu>
Date: Mon, Nov 16, 2015 at 7:25 PM
Subject: Visiting Assistant Professor: Mathematical Biology, Oregon State U

Oregon State University Department of Mathematics invites candidates
to apply for a Visiting Assistant Professor position in Mathematical
Biology, beginning the fall term of 2016, pending approval of funding
(the starting date is negotiable). This will be a fixed term annual
appointment with the possibility of a 1-year extension, depending on
performance. The Visiting Assistant Professor will work with Dr. Patrick
De Leenheer, but is encouraged to find other collaborators on campus to
foster interdisciplinary research. Candidates with expertise in ecology,
population biology, biochemical reactions, bioreactors, systems biology,
within-host virus models, and social networks are particularly encouraged
to apply, although applicants with other backgrounds in mathematical biology
will receive full consideration.

Requirements are:
1. PhD in Mathematics, Applied Mathematics or a related field,
2. Strong analytical skills in ODEs, PDEs, discrete dynamics or dynamical
systems,
3. Highly motivated to pursue interdisciplinary research.

Applicants must submit the following:
1. American Mathematical Society cover sheet
2. Curriculum Vitae
3. One page statement explaining research interests and research plans
4. Copies of up to 3 selected publications or manuscripts
5. At least 3 letters of reference.

For full consideration all application materials must be submitted via
http://www.mathjobs.org/ and received by January 15, 2016 when screening
begins. Screening will continue until the position has been filled. OSU is
an AA/EOE and actively seeks diversity among its employees and encourages
applications from women and minorities.


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From: Vaidya, Naveen K. <vaidyan@umkc.edu>
Date: Thu, Nov 12, 2015 at 9:41 PM
Subject: Assistant Professor: Statistics, University of Missouri-Kansas

Assistant Professor of Statistics

The Department of Mathematics and Statistics at the University of
Missouri-Kansas City seeks applicants for a nine-month, tenure-track assistant
professor position in Statistics, to start on August 15, 2016. Candidates
must have a Ph.D. in Statistics or Biostatistics by August 31, 2016. While
all research areas will be considered, statisticians whose research is
focused on biostatistics or statistical bioinformatics are especially
encouraged to apply.

Candidates must have excellent verbal and written communication skills
and must demonstrate strong potential to succeed in both teaching and
research. The selected candidate for this position is expected to contribute
to the department's efforts of enhancing collaborative research in the spirit
of the University's interdisciplinary Ph.D. program. Responsibilities of
this position include advising students, conducting research in statistics
and/or biostatistics, teaching undergraduate and graduate statistics courses,
and providing service to their field, the Department, the College of Arts
and Sciences, and the University.

UMKC is an equal access, equal opportunity, affirmative action employer that
is fully committed to maintaining a diverse faculty and staff. UMKC recognizes
that a diverse faculty, staff, and student population enriches the educational
experiences of the entire campus and the greater community. In support
of this objective, UMKC is committed to recruiting and retaining faculty,
staff, and students who will further enrich our campus diversity and making
every attempt to support their academic, professional, and personal success. 

Application Instructions: Applications are only accepted via online
submission. To apply, please go to the UMKC job postings website:
https://myhr.umsystem.edu/psp/tamext/KCITY/HRMS/c/HRS_HRAM.HRS_CE.GBL?SiteId=8
and search for position number 33439. Please upload a cover letter, curriculum
vitae (CV), a teaching statement (and teaching evaluations when available),
a research statement, and a list of three references (one of which should
address teaching effectiveness) with their full contact information. Please
have your references email their recommendation letters directly to the
following email account: statfacsearch@umkc.edu

Deadline: Review of applications will begin December 1, 2015 and will
continue until the position is filled.


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From: Jim Powell <jim.powell@usu.edu>
Date: Mon, Nov 16, 2015 at 5:28 PM
Subject: Assistant Professor: Numerical Modeling of Hydrologic ..., Utah State

Assistant Professor: Numerical Modeling of Hydrologic Systems

The College of Science at Utah State University invites applications for
a tenure-track position at the Assistant Professor level beginning Fall
2016. This position is part of a cluster hire in water and climate across
multiple colleges at Utah State University. Increasing water use and scarcity
associated with climate change, population growth, and resource development
will alter the quantity, quality, and sustainability of water resources. Our
search is focused on Numerical Modeling of Hydrologic Systems. We seek an
environmental scientist with expertise in numerical modeling of subsurface
flow dynamics at basin- or landscape-scales. Preference will be given
to candidates who will develop a research program in one or more of the
following focus areas: groundwater recharge, groundwater-climate interactions,
simulation of pollutant transport, reactive transport, and/or percolation
theory, as these relate to water supply, climate change, environmental
remediation, or contaminant flow. The successful candidate will also have the
ability to teach upper division undergraduate and graduate level courses,
including numerical modeling of environmental systems, numerical methods,
numerical algorithms for differential equations, and scientific computing.

See https://usu.hiretouch.com/job-details?jobid=956 for details.


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From: coluwole@hjf.org [coluwole@hjf.org]
Sent: Tuesday, November 10, 2015 10:25 AM
Subject: Research Scientist: Computational Bioinformatics/Systems Biology

The Henry M. Jackson Foundation (HJF) is looking for junior and senior
scientists to join the U.S. Army Medical Research and Materiel Command's
Biotechnology High Performance Computing Software Applications Institute
(BHSAI) [www.BHSAI.org].  HJF provides scientific, technical, and programmatic
support services to the BHSAI. 

This opening is for dynamic scientists interested in working in an
interdisciplinary environment.

Responsibilities:
1. Develop and apply computational solutions to biomedical problems involving
computational bioinformatics and systems biology approaches.  2. Analyze
and model biological networks relevant to infectious diseases, immune
responses, and human disorders using a variety of methods such as
ordinary/partial differential equations and stochastic simulations.
3. Work simultaneously on multiple projects, involving a diverse and
interdisciplinary team of scientists across multiple laboratories.

The candidate should have a Ph.D. in a related discipline, extensive
computational experience, and a strong publication record. PLEASE ONLY
APPLY IF YOU HAVE PROVEN COMPUTATIONAL BIOLOGY EXPERIENCE.

Foreign nationals are welcome to apply. U.S. citizenship or permanent resident
status is not required. This position is located in Frederick, Maryland.

Please apply online at careers.hjf.org click "Advanced Search" and enter
job number 209457 in the Job Opening ID box.

The Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc.
(HJF) is an equal opportunity and affirmative action employer. All qualified
applicants will receive consideration for employment without regard to race,
color, religion, sex, sexual orientation, gender identity, national origin,
disability, protected veteran status or other status protected by law.


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Subject: SMBnet Reminders

To subscribe to the SMB Digest please point your browser at
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and complete the subscription information.  Alternatively, if you prefer
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After you subscribe, you will receive a greeting with additional information.

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Items of interest to the mathematical biology community may be submitted
for inclusion in the SMBnet archive.  See instructions at
    http://smb.org/publications/SMBnet/pubs/fyi .

The SMB Digest is also available on the SMB Home Page at
    http://smb.org/publications/SMBnet/digest/ .

The contents of this publication may be reproduced in whole or in part with
attribution.

End of SMB Digest
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