SMB Digest September 2, 2015 Volume 15 Issue 35
ISSN 1086-6566
Editor: Richard Schugart richard(dot)schugart(at)gmail(dot)com
Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
http://www.smb.org/ .
Access the Bulletin of Mathematical Biology, the official journal of
SMB, at http://www.springer.com/11538 .
Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org .
Issue's Topics:
Meeting: Mathematics in Biology, Dec 3-4, Uppsala U, Sweden
Conference Update: Uncertainty..., Minisymp. Deadline Extended
Software: compuGUT, Open Source, Fermentation Processes, Colon
Book: New Book Alert, Springer
Post-doc: Control Theory to Population Dynamics, U Notre Dame
Post-doc: Mathematical Ecology, U Miami
Post-doc: Ecological & Statistical Modelling, RMIT U, Melbourne
Post-doc: Theoretical Biology, NIH
Post-doc: Application Update, Toxic Metabolism..., U Idaho
Post-docs: The Michigan Society of Fellows, U Michigan
Post-docs: Mathematical Biology, MBI, Ohio State
Early Career Awards: Mathematical Biology, MBI, Ohio State
Endowed Chair: Dep. of Mathematics, U Louisiana at Lafayette
NIH: BRAIN Funding Opportunity, Educational, Comput. Neurosci.
NIH: NIGMS Network Contents, Advisory..., Funding Opportunities
SMBnet Reminders
----------------------------------------------------
From: Claus Rüffler <claus.rueffler@ebc.uu.se>
Date: August 27, 2015 at 7:00:25 AM
Subject: Meeting: Mathematics in Biology, Dec 3-4, Uppsala U, Sweden
We would like to welcome you to the 7th Swedish Meeting on Mathematics
in Biology at Uppsala University, 3-4 December 2015.
Keynote speakers:
1) Prof. André de Roos, University of Amsterdam
"Physiologically structured population models: from numerical techniques
to ecological insight"
2) Prof. Laurent Lehmann, University of Lausanne
"Invasion fitness and inclusive fitness in heterogeneous subdivided
populations"
All information about the meeting including registration can be found at
the conference website:
http://www.ieg.uu.se/animal-ecology/mathematics-in-biology-meeting/
Please feel free to forward this Email to anybody who might be
interested in the meeting and who is not a member of this list. We are
looking forward to welcome you in Uppsala!
----------------------------------------------------
From: Kirsten Wilden <Wilden@siam.org>
Date: August 31, 2015 at 1:11:14 PM
Subject: Conference Update: Uncertainty..., Minisymp. Deadline Extended
The SIAM Conference on Uncertainty Quantification, scheduled from April
5-8 in Lausanne, Switzerland, extended the minisymposium deadline to
October 5. Further information about the conference was previously
posted in SMB Digest:
http://www.smb.org/publications/SMBnet/digest/v15/v15i30.html
----------------------------------------------------
From: Arun S. Moorthy <arun.s.moorthy@gmail.com>
Date: August 31, 2015 at 8:18:08 AM
Subject: Software: compuGUT, Open Source, Fermentation Processes, Colon
We are pleased to announce the first release of compuGUT, an open source
software tool for the simulation of fermentation processes in the colon.
compuGUT is available under GPLv3 licensing at: compugut.sourceforge.net
compuGUT adopts a description of fermentation processes from the IWA
Anaerobic Digestion Model No. 1 and combines these with descriptions of
material transit and exchange (lumen-mucus-host) processes in a
spatially continuous colon. In its basic form, it accounts for dietary
fiber as the primary substrates, nine subsequent substrates/metabolites
and four functional microbial groups. It is designed for easy user
extendability, to account for additional processes and/or to tailor
simulations for specific user applications.
Included with the numerical simulation platform are scripts for the
analysis and visualization of output data sets. compuGUT is written
primarily in C, but makes use of accessory scripts written in bash
(LINUX) and R. It leverages the SUNDIALS libraries for numerical
integration and googleVis API for interactive visualization. A
precompiled version of compuGUT is available for 32/64 bit Linux
systems; the C source code is made available to allow users to extend
the model.
For more info, usage questions, suggestions for future releases, or
interest in collaborative work, please contact Arun Moorthy
(amoorthy@uoguelph.ca) or Hermann Eberl (heberl@uoguelph.ca).
compuGUT is developed at the University of Guelph as part of a research
project sponsored by the Ontario Ministry of Agriculture, Food and Rural
Affairs.
----------------------------------------------------
From: Springer <SpringerAlerts@springeronline.com>
Date: August 31, 2015 at 9:29:03 PM
Reply-To: Springer <onlineservice@springer.com>
Subject: Book: New Book Alert, Springer
NEW PRINT & EBOOKS
Mathematics
Mathematical and Computational Biology
Replication of Chaos in Neural Networks, Economics and Physics
Book Series: Nonlinear Physical Science
Akhmet, Marat; Fen, Mehmet Onur
http://www.springer.com/-/1/AU-GvHpklFXZbffrAtyK
----------------------------------------------------
From: Dervis Can Vural <dvural@nd.edu>
Date: August 28, 2015 at 11:48:31 AM
Subject: Post-doc: Control Theory to Population Dynamics, U Notre Dame
Theoretical Many-Body Physics and Biology group lead by Dervis Can Vural
at the Physics Department in University of Notre Dame is looking for a
full time postdoctoral researcher, interested in complex systems,
systems biology, networks and evolution. Specifically, we are interested
in applying control theory to population dynamics and evolutionary
biology. More details can be found at
https://academicjobsonline.org/ajo/jobs/5755
----------------------------------------------------
From: Chris Cosner <gcc@math.miami.edu>
Date: August 31, 2015 at 12:05:32 PM
Subject: Post-doc: Mathematical Ecology, U Miami
Description: We have funding for a post-doctoral fellow in the
Department of Mathematics, University of Miami, Coral Gables, Florida.
We anticipate that the position will start in January 2016. We are
seeking an individual with a PhD in mathematics or applied mathematics
and a strong background in the theory and applications of
reaction-diffusion-advection systems, integro-difference models, and
related models in spatial ecology. We are especially interested in
individuals with strong computational skills. The position will entail
working with Robert Stephen Cantrell, me, and our collaborators on
various problems related to mathematical models for the evolutionary
ecology of dispersal traits. Specifically, we are interested in using
reaction-advection-diffusion systems and integro-difference models to
gain insight into the effects and evolution of traits that mediate
dispersal behavior in spatially and temporally varying environments. The
work will involve modeling, mathematical analysis, and numerical
analysis. The University of Miami is an Equal Opportunity Employer -
Females/Minorities/Protected Veterans/Individuals with Disabilities are
encouraged to apply. Applicants and employees are protected from
discrimination based on certain categories protected by Federal law.
Contact: Chris Cosner gcc@math.miami.edu
----------------------------------------------------
From: Lewi Stone <lewistone2@gmail.com>
Date: August 31, 2015 at 11:58:55 PM
Subject: Post-doc: Ecological & Statistical Modelling, RMIT U, Melbourne
We are looking to recruit a postdoctoral fellow to work on an ARC funded
project that deals with ecological and statistical modelling. The
project will continue for two-years with a possible extension depending
on funding availability. The applicant should have a good
mathematics/statistics background as well as a strong interest in
ecology/biology.
The project is being run at RMIT University, led by PI's
Yan Wang, Lewi Stone, Ascelin Gordon.
External Principal Investigators: David Dowe, Monash University
Robert Dorazio USGS, Andy Solow Woods Hole
Project Summary: Identifying how species are distributed over the
landscape, interact and self-organize into foodwebs are central goals in
Ecology. This project will provide innovative new modelling tools to
improve our understanding of species distributions and their foodweb
networks. Broadly speaking, the successful candidate together with the
PI's will be developing a general framework for extending species
distribution models to deal with multiple species, incorporating both
their interactions as well as surveillance errors in detection.
Secondly, the candidate has the possibility to develop modern network
approaches for analysing foodwebs. This is a loose guideline; there are
also possibilities for pursuing work on related research topics.
Applicants should send CV's plus the names of three potential referees
to Prof. Lewi Stone lewistone2@gmail.com preferably before September 30,
2015. Enquiries are welcome.
----------------------------------------------------
From: Periwal, Vipul (NIH/NIDDK) [E] <vipulp@niddk.nih.gov>
Date: September 1, 2015 at 9:47:21 AM
Subject: Post-doc: Theoretical Biology, NIH
Position Type: Postdoctoral Position at the NIH
Position Title: Theoretical biology
Position Description:
-Theoretical systems biology, applying analytical and computational
methods to biological inference problems aimed at uncovering fundamental
biological principles and mechanisms that impact human health.
-The Computational Medicine Section is part of the Laboratory of
Biological Modeling, a laboratory with a broad range of modeling
projects important for human health.
-Strong computational skills.
-Please email a curriculum vitae, names and contact information for at
least three individuals familiar with your research, and a statement of
research interests and future goals to Vipul Periwal,
vipulp@niddk.nih.gov, with subject heading: Computational Medicine
Search.
Employer Name: National Institute of Diabetes and Digestive and Kidney
Diseases
Position Location: Bethesda, MD
Application Deadline Date: Until filled
The NIH is dedicated to building a diverse community in its training and
employment programs.
----------------------------------------------------
From: Arianne Apostol <arianne@jobelephant.com>
Date: August 27, 2015 at 11:33:24 AM
Subject: Post-doc: Application Update, Toxic Metabolism..., U Idaho
In last week's SMB Digest, there was an advertisement for a post-doc on
toxic metabolism & cell population dynamics at the University of Idaho
(see http://www.smb.org/publications/SMBnet/digest/v15/v15i34.html).
To apply for the position, please visit http://apptrkr.com/660723.
----------------------------------------------------
From: Santiago Schnell <schnells@umich.edu>
Date: September 1, 2015 at 10:12:01 AM
Subject: Post-docs: The Michigan Society of Fellows, U Michigan
The Michigan Society of Fellows invite applications to its postdoctoral
fellowship program for recent PhDs in the mathematical, physical, life
and social sciences, and in the professional schools. These three-year
positions at the University of Michigan are open to PhDs who wish to
pursue research opportunities while teaching at a major research
university. Eight fellowships are available, with an annual stipend of
$55,000. Applications must be submitted electronically by September 29,
2015, 1 PM EDT. The online application is available at
http://www.societyoffellows.umich.edu. Questions may be submitted to
society.of.fellows@umich.edu.
----------------------------------------------------
From: Tony Nance <tony@mbi.osu.edu>
Date: August 27, 2015 at 9:05:55 AM
Subject: Post-docs: Mathematical Biology, MBI, Ohio State
MBI Postdoctoral Fellow
Mathematical Biosciences Institute (MBI) is accepting applications for
Postdoctoral Fellows to start September 2016.
MBI postdoctoral fellows engage in a two-year integrated program of
tutorials, working seminars, workshops, and interactions with their
mathematical and bioscience mentors. These activities are geared toward
providing the tools to pursue an independent research program with an
emphasis on collaborative research in the mathematical biosciences. MBI
facilitated activities are tailored to the needs of each postdoctoral
fellow.
Applying for an MBI Postdoctoral Fellowship:
Applications for a Postdoctoral Fellowship completed before December 7,
2015 will receive full consideration.
Applications for an MBI Postdoctoral Fellowship should be submitted
https://www.mathjobs.org/jobs/mbi .
For additional information please contact Rebecca Martin
( rebecca@mbi.osu.edu or 614-688-3519 ) or visit
http://mbi.osu.edu/participate/postdoctoral-fellow/ .
MBI receives major funding from the National Sciences Foundation
Division of Mathematical Sciences and is supported by The Ohio State
University. Mathematical Biosciences Institute adheres to AA/EOE
guidelines.
----------------------------------------------------
From: Tony Nance <tony@mbi.osu.edu>
Date: August 27, 2015 at 9:06:02 AM
Subject: Early Career Awards: Mathematical Biology, MBI, Ohio State
MBI Early Career Awards for 2016-2017
Mathematical Biosciences Institute (MBI) is accepting applications for
Early Career Awards for the 2016-2017 emphasis programs:
Fall 2016 - Analysis of Complex Data in Biological Systems
Spring 2017 - Growth and Morphogenesis
Early Career Awards enable recipients to be in residence at the
Mathematical Biosciences Institute for stays of three to four months
during an emphasis program. Details of the 2016-17 programs can be found
at http://mbi.osu.edu/programs/emphasis-programs/ .
Early Career Awards are aimed at non-tenured scientists who have
continuing employment and who hold a doctorate in any of the
mathematical, statistical, and computational sciences, or join any of
the biological, medical, and related sciences.
An Early Career Award will be for a maximum of $7,000 per month of
residency. The award may be used for salary and benefits, teaching
buyouts, and/or local expenses (restrictions apply).
Applying for an Early Career Award:
Applications for an Early Career Award completed before November 30,
2015 will receive full consideration. The applicant should state the
period that he or she would like to be in residence.
Applications for an Early Career Award should be submitted online at
https://www.mathjobs.org/jobs/mbi
For additional information please contact Rebecca Martin
( rebecca@mbi.osu.edu or 614-688-3519 ) or visit
http://mbi.osu.edu/participate/early-career-award/
MBI receives major funding from the National Sciences Foundation
Division of Mathematical Sciences and is supported by The Ohio State
University. Mathematical Biosciences Institute adheres to AA/EOE
guidelines.
----------------------------------------------------
From: Glenda G Evans-Broussard <glenda@louisiana.edu>
Date: August 31, 2015 at 3:37:10 PM
Subject: Endowed Chair: Dep. of Mathematics, U Louisiana at Lafayette
Applications are invited for the position of the Ray P. Authement
Endowed Chair of Computational Mathematics in the Mathematics Department
at the University of Louisiana at Lafayette. Duties will include
teaching primarily at the graduate level, conducting research, directing
graduate students, and engaging in departmental and professional
services. Applicants should have a Ph.D. in mathematics or a closely
related field, with a strong research program and a commitment to
excellence, commensurate with appointment at the rank of Full Professor.
Preference will be given to candidates in the area of biomathematics who
have an outstanding publication record, a strong history of attracting
substantial external funding, and extensive experience in mentoring
doctoral students. The successful candidate will be expected to provide
leadership in enhancing the graduate program in the department and
strengthening interdisciplinary collaboration with other departments,
especially the Department of Biology.
The Department of Mathematics has an established Ph.D. program and is
one of the largest academic units on campus. Current faculty research
interests include algebra, analysis, applied mathematics with particular
emphasis on biomathematics, topology, and statistics.
UL Lafayette is a public research university with High Research Activity
with accreditation from the Southern Association of Colleges and Schools
Commission on Colleges.
The appointment will commence August 17, 2016, or at the beginning of a
subsequent term. Salary is negotiable, depending on qualifications.
Applications will be reviewed as they are received and continue until
the position is filled. To ensure full consideration, receipt of
complete application material is required on or before October 31, 2015.
Applicants should provide a cover letter detailing their vision for the
department and how their background could support this vision, a
complete curriculum vitae, and five letters of reference. UL Lafayette
is an equal opportunity employer dedicated to increasing diversity among
its ranks. Inquiry should be sent to: Dr. Keng Deng, Search Committee,
glenda@louisiana.edu.
----------------------------------------------------
From: Whang, Kenneth C. <kwhang@NSF.GOV>
Date: August 31, 2015 at 11:48:29 AM
Reply-To: CRCNS Community <CRCNS-EXTRA@LISTSERV.NSF.GOV>
Subject: NIH: BRAIN Funding Opportunity, Educational, Comput. Neurosci.
BRAIN Initiative: Short Courses in Computational Neuroscience (R25)
Description: Courses for Skills Development. This FOA will support short
courses to facilitate the development of a sophisticated cadre of
investigators with the requisite knowledge and skills in computational
neuroscience perspectives and techniques for analyzing and interpreting
complex, high-dimensional neuroscience data to advance the NIH BRAIN
Initiative (http://www.braininitiative.nih.gov/about.htm). For the
purposes of this FOA, computational neuroscience encompasses theoretical
neuroscience, computational and mathematical modeling of neural systems,
and/or statistical perspectives and techniques. Each short course is
expected to include both didactics and in-person/hands-on experiences.
This FOA is intended for participants who are graduate students, medical
students, postdoctoral scholars, medical residents, and/or early-career
faculty.
Budget: Application budgets are limited to $200,000 in direct costs
annually and are expected to reflect the actual needs of the proposed
project.
Award Project Period: The scope of the proposed project should determine
the project period. The maximum period is 3 years.
Note: Proposed Research Education Program. While the proposed research
education program may complement ongoing research training and education
occurring at the applicant institution, the proposed educational
experiences must be distinct from those research training and research
education programs currently receiving federal support.
Letter of Intent Due Date: October 6, 2015
Application Due Date: November 6, 2015, by 5:00PM local time; No late
applications will be accepted for this Funding Opportunity Announcement
For more information and link to the funding opportunity announcement:
http://grants.nih.gov/grants/guide/rfa-files/RFA-MH-16-700.html
----------------------------------------------------
From: Dieffenbach, Ann (NIH/NIGMS) [E] <DIEFFENA@NIGMS.NIH.GOV>
Date: September 1, 2015 at 9:42:34 AM
Subject: NIH: NIGMS Network Contents, Advisory..., Funding Opportunities
Contents
-Advisory Council Meeting
-Outcomes Analysis of the NIGMS Postbaccalaureate Research Education
Program
-Training Career Outcomes
-Give Input on Simplifying NIH Grant Application Instructions
-Funding Opportunities
For more information, see
https://list.nih.gov/cgi-bin/wa.exe?A2=ind1509&L=nigms_network&F=&S=&P=67
----------------------------------------------------
Subject: SMBnet Reminders
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End of SMB Digest
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