SMB Digest August 26, 2015 Volume 15 Issue 34
ISSN 1086-6566
Editor: Richard Schugart richard(dot)schugart(at)gmail(dot)com
Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
http://www.smb.org/ .
Access the Bulletin of Mathematical Biology, the official journal of
SMB, at http://www.springer.com/11538 .
Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org .
Issue's Topics:
President's Message: Are you connected to the SMB?
CfP: Plant Morph. ..., Abstract due Oct 16, Paper due Mar 18
Symposium: Non-Coding Genome, Oct 18-21, EMBO|EMBL, Heidelberg
Conference Update: Control of..., Deadline Extended to Sep 21
Conference: Biol.&Math. ..., May 20-22, Virginia Commonwealth U
Post-doc: Ecological Modeling, U California, Santa Barbara
Post-doc: Modelling Evolution of Disease-Associated..., France
Post-doc: Education Research & Evaluation, NIMBioS, U Tennessee
Post-doc: Toxic Metabolism & Cell Population Dynamics, U Idaho
Post-doc: Statistics, Species Dist. Modeling, RMIT U, Melbourne
Post-doc: Modeling Bone Homeostasis, McGill U, Canada
Post-docs: Applied Statistics, Aarhus U, Denmark
SMBnet Reminders
----------------------------------------------------
From: Santiago Schnell <schnells@umich.edu>
Date: August 20, 2015 at 4:49:07 PM
Subject: President's Message: Are you connected to the SMB?
The Society for Mathematical Biology (SMB) promotes the development and
dissemination of research at the interface between the mathematical and
biological sciences. Mathematical biology, in partnership with
computational biology, is essential in solving many important problems
in the biological and medical sciences. SMB serves a diverse community
of researchers and educators in academia, industry, and in government
agencies throughout the world!
Our website has breaking news and also information on scientific
meeting, funding, educational resources, membership and much more.
All at: http://www.smb.org.
Make sure you're on the mailing list for our Newsletter by joining the
SMB at http://smb.org/membership. Please keep an updated email (and
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Follow us on Twitter @SMB_MathBiology. We can be found there daily,
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to receive updates.
The Bulletin of Mathematical Biology is our official journal. Read the
latest research at the junction of computational, theoretical and
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also submit your next research article to the Bulletin!
Are any of your colleagues not receiving the SMB Digest? Ask them to
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Please help the SMB by forwarding this message to your colleagues. Or,
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membership(at)smb(dot)org .
Santiago Schnell
President, The Society for Mathematical Biology
You can also follow me on Twitter: @SantiagoSchnell
----------------------------------------------------
From: Alexander Bucksch <bucksch@gatech.edu>
Date: August 25, 2015 at 1:36:43 PM
Subject: CfP: Plant Morph. ..., Abstract due Oct 16, Paper due Mar 18
Please find a call for papers for the Frontiers in Plant Science
Research Topic "Plant morphological modeling: Unleashing geometric and
topologic potential within the plant sciences" below. This Research
Topic, co-hosted by Alexander Bucksch (Georgia Institute of Technology)
and Dan Chitwood (Danforth Center for Plant Science) is meant to bring
together mathematicians, computer scientists and plant biologists to
better characterize the plant phenotype using modeling and other
quantitative approaches. The Research Topic coincides with a NIMBioS
Investigative Workshop on Morphological Plant Models
(http://www.nimbios.org/workshops/WS_plantmorph) for which we hope will
spur collaborative perspectives on plant morphology and mathematics
leading to submitted manuscripts. But we welcome manuscripts from the
entire community, and if you know colleagues for which this Research
Topic is appropriate, please spread the word!
The deadline for abstract submission is October 16, 2015 and the
manuscript submission deadline is March 18, 2016. But if you need more
time, please contact Alexander Bucksch (bucksch@gatech.edu) or Dan
Chitwood (dchitwood@danforthcenter.org) and we'll see what we can do.
We look forward to your contributions and a great Research Topic!
In collaboration with Frontiers in Plant Science, section Plant
Biophysics and Modeling, we are organizing a Research Topic titled
"Plant morphological modeling: Unleashing geometric and topologic
potential within the plant sciences", hosted by Daniel H Chitwood,
Alexander Bucksch. As host editors, we would like to encourage you to
contribute to this topic. Please find more information about Research
Topics below, including the publishing fees that apply. You can also
visit the homepage we have created on the Frontiers website, which
defines the focus of the topic, and where all published articles will
appear.
http://frontiersin.org/Plant_Biophysics_and_Modeling/researchtopics/Plant_morphological_modeling_Unleashing_geometric_and_topologic_potential_within_the_plant_sciences/4300
Please note the submission deadline for this Research Topic: Mar 18,
2016
With your agreement to take part, we would request you submit an
abstract in advance of any manuscript submission you choose to make
(deadline identified at the homepage above).
As we are using the Frontiers system to manage this topic, please first
indicate your decision to participate by clicking on one of the
following links.
AGREE to Participate
http://frontiersin.org/AcceptContributor.aspx?activationkey=c68fdcde-1078-40c2-9d76-24e99b31c762
DECLINE to Participate
http://frontiersin.org/DeclineContributor.aspx?activationkey=c68fdcde-1078-40c2-9d76-24e99b31c762
Let us know if you have any questions about my Research Topic. We look
forward to hearing from you soon.
With best regards,
Alexander Bucksch and Daniel H Chitwood
Guest Associate Editors, Frontiers in Plant Science
www.frontiersin.org
----------------------------------------------------
From: EMBL Events <marketing@embl.de>
Date: August 24, 2015 at 5:31:00 AM
Subject: Symposium: Non-Coding Genome, Oct 18-21, EMBO|EMBL, Heidelberg
For information on the EMBO|EMBL Symposium on The Non-Coding Genome, see
http://www.embo-embl-symposia.org/symposia/2015/EES15-08/index.html
----------------------------------------------------
From: bliman <pierre-alexandre.bliman@inria.fr>
Date: August 25, 2015 at 11:00:18 AM
Re-Sent From: ELADDADI, AMINA <eladdada@mail.strose.edu>
Subject: Conference Update: Control of..., Deadline Extended to Sep 21
The Conference on Mathematical Modeling and Control of Communicable
Diseases, scheduled from January 11-14 in Rio de Janeiro, Brazil,
extended the submission deadline to September 21. Further information
about the conference was posted in last week's SMB Digest:
http://www.smb.org/publications/SMBnet/digest/v15/v15i33.html.
----------------------------------------------------
From: Rebecca Segal <rasegal@vcu.edu>
Date: August 25, 2015 at 12:27:39 PM
Subject: Conference: Biol.&Math. ..., May 20-22, Virginia Commonwealth U
Conference Announcement: BAMM! Biology and Mathematics through Medicine!
May 20-22, 2016
http://www.go.vcu.edu/bamm
This is a new Biomath conference that will be held at Virginia
Commonwealth University in Richmond, VA from Friday, May 20 to Sunday,
May 22, 2016. The conference will consist of plenary talks, break-out
sessions, and a poster session. We welcome participation from
researchers at all academic levels working in mathematical biology.
Funding from SMB and MBI has been secured for travel awards for junior
researchers. Additional travel funds may be available pending grant
funding.
Confirmed plenary speakers:
Jim Cushing (The University of Arizona)
Leah Edelstein-Keshet (University of British Columbia)
Bard Ermentrout (University of Pittsburg)
James Keener (University of Utah)
Important Dates:
Abstract Submissions Deadline 3/1/2016
Registration Deadline 4/10/2016
Organizing Committee:
David Chan, Laura Ellwein, Cheng Ly, Angela Reynolds, Suzanne Robertson,
and Rebecca Segal
Questions: BAMM16@vcu.edu
----------------------------------------------------
From: Roger Nisbet <roger.nisbet@lifesci.ucsb.edu>
Date: August 20, 2015 at 8:51:47 AM
Subject: Post-doc: Ecological Modeling, U California, Santa Barbara
POSTDOCTORAL POSITION (ASSISTANT/ASSOCIATE SPECIALIST) IN ECOLOGICAL
MODELING
University of California, Santa Barbara
Applications are invited for a post-doctoral specialist to participate
in systems-based research for evaluating ecological impacts of
manufactured chemicals. The overarching aim is to use Dynamic Energy
Budget (DEB) models to inform ecological risk assessment by determining
how the effects of exposure to chemical stressors are expressed across
levels of biological organization. Specific projects include:
(i) determining how genomic data on two model organisms (the waterflea
Daphnia and the estuarine fish Fundulus) experiencing combined food and
chemical stress relate to parameters in DEB models; (ii) predicting
organismal and population "tipping points" caused by failure of
physiological and population regulatory processes; (iii) developing
individual and population models of adaptation to stress in chronically
polluted environments. The person appointed would work on one or two of
these projects.
The research is part of a recently funded project led by Dr. Roger
Nisbet (UCSB), working in collaboration with Dr. Erik Muller (UCSB) and
Dr. Andrew Whitehead (UC Davis). UCSB is renowned for its quantitative
ecological research and has a number of faculty involved in
ecotoxicological research projects. There will be opportunity to
interact and collaborate with researchers in the University of
California Center for Environmental Implications of Nanotechnology
(www.cein.ucla.edu).
Applicants must possess a PhD and have research experience in one or
more of the following areas: theoretical ecology, environmental
modeling, systems biology, or closely related disciplines. The position
is grant funded for 2 years. Start date: 1 January 2016 or as soon as
possible thereafter.
Applicants should submit a CV, a short (1-2 page) statement of research
experience and interests, and the names, affiliations and e-mail
addresses of three references to
https://recruit.ap.ucsb.edu/apply/JPF00526
Initial screening of applications will begin on 21 September 2016, but
will remain open until filled.
The department is especially interested in candidates who can contribute
to the diversity and excellence of the academic community through
research, teaching and service. The University of California is an Equal
Opportunity/Affirmative Action Employer and all qualified applicants
will receive consideration for employment without regard to race, color,
religion, sex, sexual orientation, gender identity, national origin,
disability status, protected veteran status, or any other characteristic
protected by law.
----------------------------------------------------
From: Frederic Grognard <frederic.grognard@inria.fr>
Date: August 21, 2015 at 7:13:37 AM
Subject: Post-doc: Modelling Evolution of Disease-Associated..., France
A post-doctoral position on "Modelling evolution of disease-associated
traits under local competition with conspecifics" is available at Inria
Sophia Antipolis (France) for a duration of 20 months. This
post-doctoral position is for an applied mathematician with interest in
dynamic games theory or a theoretician in evolutionary biology. It will
be funded by the ANR Funfit project (Funfit: A trait-based approach
linking individual Fitness of Fungal plant pathogens to ecological
strategies). The local contact is Dr. Frédéric Grognard
(frederic.grognard@inria.fr).
For more informations on the position see
https://dl.dropboxusercontent.com/u/4298200/PostDoc_2015_Funfit.pdf
Details about the application can be found at
http://www.inria.fr/en/institute/recruitment/offers/post-doctoral-research-fellowships/post-doctoral-research-fellowships/campaign-2015.
----------------------------------------------------
From: Kelly Sturner <kmoran@nimbios.org>
Date: August 25, 2015 at 12:23:09 PM
Subject: Post-doc: Education Research & Evaluation, NIMBioS, U Tennessee
Postdoctoral Fellow Position in Education Research and Evaluation
The National Institute for Mathematical and Biological Synthesis
(NIMBioS) requests applications for a Postdoctoral Fellow in Science
Evaluation, available immediately.
This Fellow will assist in development and evaluation of a Quantitative
Biology Concept Inventory (QBCI) to assess the impact of biological
constructs and examples on student quantitative comprehension. The
Fellow will have primary responsibility for all aspects of data
collection, coordinating focus groups and obtaining professional review
of QBCI. A successful applicant will have prior experience in evaluation
of educational efforts in science, with a Ph.D. in Evaluation, Science
Education, Mathematics Education, or a related field. Experience in
interdisciplinary research, statistical methodology, or undergraduate
teaching will also be considered as positive factors in evaluation of
candidates.
The Fellowship is for two years at an annual stipend of approximately
$51,000. For a full description of the position, qualifications, and
application process, please visit: http://www.nimbios.org/positions/.
The position will remain open until filled, and is available to start
immediately.
----------------------------------------------------
From: Arianne Apostol <arianne@jobelephant.com>
Date: August 25, 2015 at 2:55:43 PM
Subject: Post-doc: Toxic Metabolism & Cell Population Dynamics, U Idaho
Postdoctoral Fellow
Location - Moscow
Division/College - College of Science
Department - Mathematics
FLSA Status - Overtime Exempt
Employee Category - Exempt
Pay Range - $50,000 or higher depending on experience
Salary Grade - EX
Type of Appointment - Fiscal Year
FTE - 1.0
Full Time/Part Time - Full Time
Funding - This position is contingent upon the continuation of work
and/or funding.
Position Summary - The Department of Mathematics is seeking a
postdoctoral fellow with experience in mathematical biology to join a
group researching toxin metabolism and associated cell population
dynamics. With supervision by Dr. Chris Remien at the University of
Idaho, the postdoctoral fellow will develop and analyze dynamic models
of acetaminophen-induced liver injury and use statistical parameter
estimation methods to investigate patient biomarker data. The
postdoctoral fellow will pursue research at the intersection of
mathematics and biology, work productively with experimentalists and
medical doctors, publish results in peer-reviewed journals, present
results at conferences, and interact productively with undergraduate and
graduate students and the UI research community as a whole.
Responsibilities
Job Duty Function - Research
Job Duties/Responsibilities - Develop and analyze dynamic models of
toxin metabolism and associated cell population dynamics. Use
statistical parameter estimation techniques to connect models with data.
Job Duty Function - Teaching and advising
Job Duties/Responsibilities - Provide mentorship to undergraduate and
graduate students as assigned
Job Duty Function - University Service and Leadership
Job Duties/Responsibilities - Provide services to the university,
Department of Mathematics, College of Science, and greater mathematics
community.
Position Qualifications
Minimum Qualifications
-Ph.D. in applied mathematics, mathematical biology, biomedical
engineering, computer science, physics, statistics, or related field.
-Strong background in mathematical modeling.
-Good written and oral communication skills.
Preferred Qualifications
-Knowledge and interest in molecular, cell, and population biology.
-Experience in mathematical biology.
Posting Information
Posting Number - SP000653P
Posting Date - 08/20/2015
Open Until Filled - Yes
To apply, please visit: http://apptrkr.com/660723
Special Instructions to Applicants - First priority will be given to
applications received before September 14, 2015.
Background Check Statement - Applicants who are selected as final
possible candidates may be required to pass a criminal background check.
EEO Statement - The University of Idaho is an equal opportunity employer
and does not discriminate against any employee or applicant for
employment because of race, color, religion, national origin, age,
disability, sexual orientation, gender identity/expression or any other
reason prohibited under Federal, State, or local laws. EOE AA/M/F/D/V
----------------------------------------------------
From: Lewi Stone <lewistone2@gmail.com>
Date: August 25, 2015 at 9:55:45 PM
Subject: Post-doc: Statistics, Species Dist. Modeling, RMIT U, Melbourne
We are currently seeking to recruit a postdoctoral fellow to work on a
statistically oriented project that deals with species distribution
modelling. The project will continue for two-years. The applicant should
have a good mathematics/statistics background as well as a strong
interest in ecology/biology. Ideally the applicant should be well aware
of the literature on species distribution models and state-of-the-art
methods.
The project is based at RMIT University, Melbourne, Australia led by PIs
Yan Wang, Lewi Stone, Ascelin Gordon
External Principal Investigators: David Dowe, Monash University
Robert Dorazio USGS, Andy Solow Woods Hole
Applicants should send CV's plus the names of three potential referees
to Prof. Lewi Stone lewistone2@gmail.com preferably before September 14,
2015. Enquiries are welcome.
----------------------------------------------------
From: Svetlana Komarova, Dr. <svetlana.komarova@mcgill.ca>
Date: August 26, 2015 at 9:11:10 AM
Subject: Post-doc: Modeling Bone Homeostasis, McGill U, Canada
Post-doc: Modeling bone homeostasis, McGill U, Canada
Looking for a self-directed scientist with an interest and experience in
mathematical biology who is within 4 years of graduation with PhD. The
project aims to develop mathematical models of bone homeostasis in
relation to multiple functions of bone as mechanical, endocrine and
hematopoietic organ. The support for postdoctoral fellowship
applications, conference presentations, and career development in
general will be provided. Laboratory is located within the Shriners
Hospital for Children - Canada, which offers outstanding opportunities
for conducting interdisciplinary research. The initial appointment will
be for 6 months with an option for further extension.
Qualifications and Skills: PhD in Physics, Applied Mathematics, Computer
Science or related disciplines; experience in mathematical modeling of
biological systems; basic understanding of biological processes and an
ability to search and read biomedical literature; experience is data
analysis.
To apply please submit a cover letter and CV with contact information
for 3 professional references to Dr. Svetlana Komarova, McGill
University by email: svetlana [dot] komarova [at] mcgill [dot] ca
----------------------------------------------------
From: Rodrigo Labouriau <rodrigo.labouriau@math.au.dk>
Date: August 18, 2015 at 10:19:46 PM
Subject: Post-docs: Applied Statistics, Aarhus U, Denmark
Two post-doctoral research positions in applied statistics are available
at the Department of Mathematics, Aarhus University, Denmark, in the
Applied Statistics Laboratory. The positions are for two years with the
possibility of one-year extension, starting 1 December, 2015 or as soon
as possible hereafter. Deadline: All applications must be made online
and received by 15 October, 2015.
Job description:
You will work at the Applied Statistics Laboratory at the Department of
Mathematics with:
-Development or improvement of new statistical methods directed at or
inspired by concrete applications in life and environmental sciences
-Statistical consultation and participation in research projects in
several other departments of the Faculty of Science and Technology
-Contribution to teaching statistics for non-statisticians
-Co-supervision of non-statisticians in statistical matters.
The candidates we are seeking at the Applied Statistics Laboratory are
expected to provide statistical assistance and participate in a range of
research projects (ideally in different research groups or involving
different departments at the Faculty of Science and Technology), and, in
parallel, to work in methodological/theoretical developments in
statistical themes that are relevant to these research projects. The
Applied Statistics Laboratory currently has lines of research in the
following topics: extensions of generalized linear models of high
complexity, highly complex graphical models, extensions of classical
survival/event-history analysis, spatial statistics and incompletely
observed data, but other research lines will certainly be relevant too.
The Applied Statistical Laboratory is a new research group,
supplementing the strong theoretical statistics and probability research
groups at the Department of Mathematics; the two postdoc positions will
also benefit from the rich academic environment in theoretical
statistics and mathematical aspects of statistics.
Required qualifications and selection criteria:
-PhD in statistics or a related field
-Strong background in statistics and mathematics (essential)
-Fluency in spoken and written English
You should have interest in applied statistics and research in
statistical methodological developments inspired by applications in life
and environmental sciences.
Contact:
For further information, please contact Rodrigo Labouriau,
tel. +45 87155735 (e-mail rodrigo.labouriau at math.au.dk) or Niels O.
Nygaard, tel +45 87155785 (e-mail niels.nygaard at math.au.dk).
The official call, further details and a link for applying can be found
at the following link:
http://www.au.dk/en/about/vacant-positions/scientific-positions/stillinger/Vacancy/show/760035/5283
----------------------------------------------------
Subject: SMBnet Reminders
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End of SMB Digest
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