SMB Digest May 6, 2015 Volume 15 Issue 18
ISSN 1086-6566
Editor: Wandi Ding ding.smb.digest(at)gmail(dot)com
Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
http://www.smb.org/.
Access the Bulletin of Mathematical Biology, the official journal
of SMB, at
http://www.springer.com/11538.
Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org.
Issue's Topics:
Updates for 2015 SMB Annual Meeting
Bulletin of Mathematical Biology, Vol. 77, Issue 4
CfP: MBMB Special Issue on Computations in Molecular Modeling ...
Workshop: Mathematical Trends in ..., U of Copenhagen, July 1-3
Course: Viral Bioinformatics and Genomics, UK, Aug 10-14
Workshop: Education for the Planet Earth ..., NIMBioS, Sep.30-Oct.2
School: Complex Networks and Applications ..., Brazil, Sep.28-Oct.16
Workshop: Bringing Maths to Life, Naples, October 19-21
Postdoc Position: Ecological/Environmental Modeling, Germany
Postdoc Position: Mathematical Models of Kidney Physiology, Duke U
Postdoc Position: Pharmacometrics and Systems ..., U of Florida
SMBnet Reminders
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From: Yi Jiang <
yjiang12@gsu.edu>
Date: Thu, Apr 23, 2015 at 8:54 AM
Subject: Updates for 2015 SMB Annual Meeting
SMB Annual Meeting in Atlanta (June 30-July 3):
1. Due to popular demand, we have postponed the early registration deadline
of May 1st to May 10th.
2. All submitted abstracts have been reviewed by the Scientific Committee.
The acceptance letters for contributed talks and posters have been sent out.
3. We will have a shuttle bus for SMB15 attendees running between the
conference hotel and conference site.
4. Minisymposium organizers: please make sure your invited speakers submit
their abstracts and register for the conference.
---------------------------------------------------------
From: Springer <
springer@alerts.springer.com>
Date: Fri, May 1, 2015 at 9:32 PM
Subject: Bulletin of Mathematical Biology, Vol. 77, Issue 4
Table of contents alert for Bulletin of Mathematical Biology. Volume 77
Number 4 is now available online.
http://link.springer.com/journal/11538/77/4?wt_mc=alerts.TOCjournals---------------------------------------------------------
From: Zhao, Shan <
szhao@ua.edu>
Date: Thu, Apr 30, 2015 at 4:25 PM
Subject: CfP: MBMB Special Issue on Computations in Molecular Modeling ...
The journal Molecular Based Mathematical Biology (MBMB) is a peer-reviewed,
open-access journal, aiming to promote the mathematical study of biological
processes at the molecular scale. The purpose of the current special issue
is to create a platform for researchers from mathematical, biological,
computer sciences and other related disciplines to report recent novel
developments on computational approaches for molecular graphics,
structural/functional modeling and visualization.
The solicited topics of this special issue include, but are not limited to:
* Structural determination and prediction of molecules or molecular
complexes
* Image processing, graphical modeling and visualization
* Molecular shape analysis (geometry-based identification, matching,
docking, etc.)
* Surface/volumetric mesh generation of molecules
* Bio-molecular mathematical simulations
* Molecule-related software or database development
Before submission authors should carefully read over the Author Guidelines,
which are located at
http://www.degruyter.com/view/j/mlbmb. All manuscripts
are subject to the standard peer review process before publication. Please
note the publisher has waived the Article Processing Charges for this
special issue, but articles will be open-access in accordance with the
overall goals of the journal. Prospective authors should submit their
manuscript online at
http://mlbmb.edmgr.com/.
If you have any question, please contact Professor Zeyun Yu at
yuz@uwm.edu.
Tentative Schedules:
Manuscript Due: August 1, 2015
First Round of Reviews: September 1, 2015
Anticipated Publication Date: December 1, 2015
Guest editors:
Zeyun Yu, University of Wisconsin-Milwaukee (lead)
Benzhuo Lu, Chinese Academy of Science
Xiaodong Yan, University of California, San Diego
Jie Liang, University of Illinois at Chicago
---------------------------------------------------------
From: Elisenda Feliu <
efeliu@math.ku.dk>
Date: Wed, Apr 29, 2015 at 11:03 AM
Subject: Workshop: Mathematical Trends in ..., U of Copenhagen, July 1-3
Workshop on Mathematical Trends in Reaction Network Theory
(2nd announcement), July 1-3, 2015, Copenhagen, Denmark.
http://www.math.ku.dk/~efeliu/trendsrnt/Deadline for submission of poster presentations: May 15, 2015.
Registration deadline: May 15, 2015.
The list of accepted contributed talks is available here:
http://www.math.ku.dk/~efeliu/trendsrnt/program.htmlThe workshop is organised by the group Mathematics of Reaction Networks at
the Department of Mathematical Sciences at the University of Copenhagen.
---------------------------------------------------------
From: Richard Orton <
Richard.Orton@glasgow.ac.uk>
Date: Wed, May 6, 2015 at 4:12 AM
Subject: Course: Viral Bioinformatics and Genomics, UK, Aug 10-14
Training course on Viral Bioinformatics and Genomics
Monday 10th - Friday 14th August
Application deadline 25th May
Cost ?250
http://bioinformatics.cvr.ac.uk/Downloads/OIE_announcements.pdf The course will be held at the CVR, Garscube Campus, University of Glasgow,
Glasgow, UK. The CVR has been designated an World Organisation for Animal
Health (OIE) Collaborating Centre for Viral Genomics and Bioinformatics
at the 82nd OIE General Session.
---------------------------------------------------------
From: Catherine Crawley <
ccrawley@nimbios.org>
Date: Tue, May 5, 2015 at 9:44 AM
Subject: Workshop: Education for the Planet Earth ..., NIMBioS, Sep.30-Oct.2
The National Institute for Mathematical and Biological Synthesis (NIMBioS)
is now accepting applications for the Mathematics of Planet Earth 2013+
Workshop on Education for the Planet Earth of Tomorrow to be held Sept. 30-
Oct. 2, 2015, at NIMBioS.
Objectives: The issues facing the planet call for a new type of workforce,
trained in multidisciplinary and multi-national communication and
collaboration. Held at the National Institute for Mathematical and
Biological Synthesis at the Univ. of Tennessee, Knoxville, the workshop
will focus on planning for the multidisciplinary education of students as
well as workforce development. The workshop will produce a MPE 2013+
(
http://dimacs.rutgers.edu/SpecialYears/2013_MPE/) Education Plan for the
wider mathematical sciences community and those interested in high school,
undergraduate and graduate education. Discussion sessions and panels will
be included, as well as invited speakers with expertise in green education,
communications, and undergraduate mathematics education. This workshop is
supported by the Center for Discrete Mathematics and Theoretical Computer
Science (DIMACS) and funded by the National Science Foundation.
Location: NIMBioS at the University of Tennessee, Knoxville
Co-Organizers: Midge Cozzens, DIMACS, Rutgers University; Suzanne Lenhart,
NIMBioS, University of Tennessee; Fred Roberts, DIMACS, Rutgers University;
Kelly Sturner, NIMBioS, University of Tennessee
For more information about the workshop, go to
http://www.nimbios.org/education/WS_mpe2015Funds exist for partial financial support to attend the workshop. Priority
will be given to early career participants. Applications for financial
support received by June 15, 2015, will receive full consideration.
Pre-registration deadline: September 23, 2015
---------------------------------------------------------
From: Jandira Ferreira de Oliveira <
jandira@ictp-saifr.org>
Date: Tue, May 5, 2015 at 12:12 PM
Subject: School: Complex Networks and Applications ..., Brazil, Sep.28-Oct.16
ICTP-SAIFR School on Complex Networks and Applications to Neuroscience
Start time: September 28, 2015
Ends on: October 16, 2015
Location: São Paulo, Brazil
Venue: IFT-UNESP
Description:
The School on Complex Networks and Applications to Neurosciences will cover
theoretical aspects and current trends in the Theory of Complex Networks
including their structural properties, dynamical processes, and multiplex
networks with applications to social, technological and biological systems.
The second half of the school will provide a detailed course on
Neurosciences focused on the physiology of the cell and neuronal models,
time series analysis and characterization, complex brain networks,
collective phenomena and information processing in the brain, and
neuroimage techniques and mental diseases. There is no registration fee
and limited funds are available for local and travel support of
participants.
This school is part of the topics in Nonlinear Science: Fundamentals and
Applications. More information at:
http://www.ictp-saifr.org/neuroscienceApplication deadline: July 24, 2015
---------------------------------------------------------
From: Mario Guarracino <
mario.guarracino@cnr.it>
Date: Wed, Apr 29, 2015 at 11:35 AM
Subject: Workshop: Bringing Maths to Life, Naples, October 19-21
We would like to invite you to the 2nd edition of the Bringing Maths to
Life Workshop that will be held in Naples, on 19-21 October 2015
(
http://www.bmtl.it).
BMTL Workshop will be hosted in the ancient city of Naples, and will
provide a timely and pertinent occasion for international researchers that
wish to engage in cutting edge science at the interface of mathematics and
biology.
This year scientific topics include:
- Genome dynamics
- Dynamics of biological networks
- Pattern recognition dynamics
- Dynamics of polymorphisms
Confirmed speakers include:
- Adam Eyre-Walker, University of Sussex, UK
- Chris Bowler, École Normale Supérieure, France
- Marco Cosentino Lagomarsino, Universite Pierre et Marie Curie, France
- Morgane Thomas-Chollier, École Normale Supérieure, France
- Sebaastian Meijsing, Max Planck Institute for Molecular Genetics,
Germany
- Panos Pardalos, University of Florida, USA
For more information visit the website (
http://www.bmtl.it)
Early registration & abstract submission: June 30th, 2015
Selected peer-review papers will be considered for publication in
monographs and special issues of international journals.
---------------------------------------------------------
From: Frank Hilker <
frank.hilker@uni-osnabrueck.de>
Date: Thu, Apr 30, 2015 at 11:22 AM
Subject: Postdoc Position: Ecological/Environmental Modeling, Germany
The Institute of Environmental Systems Research at the School of
Mathematics/Computer Science of Osnabrück University (Germany) has an
opening for a Scientific Research Associate in environmental/ecological
modeling (salary scale E 13, 100%) for the duration of three years,
starting on 1 October 2015.
The successful candidate will perform research in mathematical or
computer-based modeling of ecological and environmental systems. In
addition, the position comes with a teaching duty amounting to 4 contact
hours(180 minutes) per week during the teaching period (29 weeks per year).
Required Qualifications:
Qualifications required are a doctoral degree in (Applied or Bio-)
Mathematics, Physics, Theoretical or Quantitative Biology, Geoecology,
Computer Science, or an interdisciplinary program such as Applied Systems
Science or Environmental Modeling.
Ideally, the successful candidate has research experience in one of the
following fields:
- Riverine modeling
- Modeling integrated pest management
- Spatio-temporal population dynamics
- Modeling of wildlife diseases
Salary and conditions:
Salary is according to German salary scale TV-L E 13, 100% (gross salary of
approx. EUR 42,000-49,000 depending on experience).
Applications:
To apply, please email Prof. Frank M. Hilker(
frank.hilker@uni-osnabrueck.de)
with a statement of interest, CV, transcripts, and the names and contact
addresses of at least two academic references (in one pdf file) by May 29,
2015. For further information and inquiries, please contact Frank M. Hilker
(
frank.hilker@uni-osnabrueck.de, phone
+49 541 969 3441).
---------------------------------------------------------
From: Anita T. Layton <
alayton@math.duke.edu>
Date: Thu, Apr 30, 2015 at 12:48 PM
Subject: Postdoc Position: Mathematical Models of Kidney Physiology, Duke U
Applications are sought for a two-year postdoctoral position for the Layton
Lab in the Department of Mathematics at Duke University. Research will
focus on the development and analysis of mathematical models of kidney
physiology. The position also involves teaching up to 2 classes a year.
Desirable qualities of candidates include (1) a PhD in mathematics or
applied mathematics, engineering, computer science, or another relevant
field, (2) strong programming and numerical skills, and (3) background
and/or interest in physiology.
Salary will be competitive and commensurate with skills and experience.
Benefits will be provided. Support is available for travel to conferences
as appropriate.
For further information, please email Prof. Anita Layton
(
alayton@math.duke.edu) with a statement of interest, a CV, and the names
and contract information for three references. The position is open
immediatley and applications will be considered until the position is
filled.
Lab website:
http://www.math.duke.edu/~alayton/---------------------------------------------------------
From: Mirjam Trame <
mtrame@cop.ufl.edu>
Date: Mon, May 4, 2015 at 7:17 AM
Subject: Postdoc Position: Pharmacometrics and Systems ..., U of Florida
Postdoctoral Research Associate in Pharmacometrics and Systems Pharmacology
Center for Pharmacometrics and System Pharmacology, Department of
Pharmaceutics, College of Pharmacy, University of Florida, Orlando (Lake
Nona), Florida.
Job Function: Postdoctoral Research Associate Positions in
Pharmacometrics, PBPK modeling, Systems Biology/Pharmacology
Entry Level: N/A
Setting: College/University/Medical City Campus
Location: Orlando (Lake Nona), Florida, United States
Job Type: Full-Time
Minimum Education: Ph.D. or equivalent degree in quantitative sciences
including Engineering, Statistics, Mathematics and Systems Biology/
Pharmacology
Fellowship Description
The mission of the Center for Pharmacometrics and System Pharmacology (CPSP)
at the University of Florida (UF) is to develop new quantitative tools and
mechanistic approaches to evaluate and predict the efficacy and safety of
medicines. The CPSP has several two year fellowships available for
scientists who intend to further their training for a career in drug
development, academia or regulatory science.
The successful applicants will have access to clinical trial data in order
to learn how to apply and become proficient in using population-based PK/PD
modeling, Systems Biology/Pharmacology and computer simulation approaches
to solve drug development and regulatory problems such as optimal dosing
and biomarker qualification. Depending on the availability of projects and
interests of the applicant, he or she will also learn how to effectively
use disease progression models and physiologically based PK/PD models to
design clinical trials, understand the pharmacological mechanisms of drug
action, explore covariate effects on PK and PD and determine the influence
of genetic factors on drug dosing. The fellow will have the opportunity to
participate in systems pharmacology research under the direction of a CPSP
faculty to identify the mechanistic basis of drug adverse drug events
arising out of drug development programs, FDA safety alerts or clinical
practice.
Postdoctoral research associates will engage in a combination of duties that
will include research projects, graduate student mentoring, grant writing
and classroom teaching experiences. Fellows will also gain experience
outside the University of Florida through industry or FDA internships or
off-site participation in research with our Orlando partners including the
Sanford Burnham Medical Research Institute (SBMRI), Nemours Children
Hospital, and SBMRI-Florida Hospital Translational Research Institute. It
is expected that fellows attend and present at professional meetings,
participate in workshops and seminars and prepare at least 3-4 peer-
reviewed publications to build a foundation for personal career
achievements. In addition to the scientific and clinical duties, fellows
are given the opportunity to grow their "soft skills", such as oral
communication, presentation skills and working on multi-disciplinary teams.
Job Qualifications
Preferred qualifications for the position are a doctoral (Ph.D. or
equivalent) degree in quantitative sciences including Engineering,
Statistics, Mathematics and Systems Biology as well as knowledge of, or
experience in, therapeutics in one or more disease areas with an interest in
pursuing a career in Pharmacometrics and/or Systems Pharmacology. The ideal
candidate should possess strong programming skills, excellent written and
verbal communication, good organizational abilities, and team work. A
background and understanding of basic pharmacology, pharmacometrics and/or
systems biology/pharmacology is preferred as is hands-on knowledge in using
software platforms such as NONMEM, MATLAB, R, SAS, PK-Sim, GastroPlus,
SimCYP or other software/scripting languages is required. The candidate
must be self-directed and self-motivated.
To Apply
Please send curriculum vitae and contact information for three references
to Dr. Lawrence J. Lesko,
llesko@cop.ufl.edu<mailto:
llesko@cop.ufl.edu>,
6550 Sanger Road Orlando, FL 32827.
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Subject: SMBnet Reminders
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End of SMB Digest
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