Subject: Society for Mathematical Biology Digest

SMB Digest  November 11, 2014  Volume 14  Issue 46
ISSN 1086-6566

Editor: Ray Mejía ray(at)smb(dot)org

Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
http://www.smb.org/ .

Access the Bulletin of Mathematical Biology, the official journal of SMB, at
http://www.springer.com/11538 .

Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org .

Issue's Topics:
   Biology and Mathematics in the Bay Area Day, November 22, UC Davis
   Gordon Research Conference on Matrix Metalloproteinase
   CfA: Olfactory Modeling, a NIMBioS Investigative Workshop
   2015 Gordon Conference and Seminar, Physical Virology, January 25-30
   CfP: AlCoB 2015, August 4-6, Mexico City
   AIBS Invitation to Join
   PhD Scholarship, Mathematical Biology, University of Auckland
   PhD Student Position, Mathematical Modelling Viral & Bacterial .., CRM
   Postdoc Position, Receptor Pharmacology Team, Novo Nordisk
   Postdoc, Tracer Kinetic Modeling, Positron Emission Tomography, Yale
   Postdoc, Mathematical Biology, Simons-University of Pennsylvania
   Postdoctoral Research Associate, Harvard Medical School
   Postdoc Position, Computational HIV Vaccinology, University of Zurich
   Assistant/Associate/Full Professor, Applied Mathematics, NJIT
   Open Rank Position, Statistical Bioinformatics, Iowa State University
   Selected NIH Intramural Research and other Positions - November Update
   SMBnet Reminders


----------------------------------------------------

From: Mariel Vazquez <arsuaga3@gmail.com>
Date: Tue, Nov 4, 2014 at 11:33 AM
Subject: Biology and Mathematics in the Bay Area Day, November 22, UC Davis

Dear Colleagues,

The Biology and Mathematics in the Bay Area (BaMBA) Day is an annual meeting
aimed at creating a fairly informal atmosphere to explore the role of
mathematics in biology. Going beyond traditional applied mathematics, the
topics include sophisticated computational methods, biophysical methods,
discrete mathematics and topological methods. Our goal is to encourage
dialogue between researchers and students from different disciplines in
an atmosphere that promotes the open exchange of ideas and viewpoints to
discuss the role of mathematics in modern molecular biology. Please join
us for a day full of enticing discussions!

BaMBA 9 will be held 9am-6pm on Saturday, November 22nd, in 1002 Geidt Hall
on the UC Davis campus. The talks by keynote speakers will be followed by
a poster session.

Keynote speakers:
Ileana Streinu, Smith College
Sean Mooney, Buck Institute
Michael Levitt, Stanford
Sharon Aviran, UC Davis
Stephen Kowalczykowski, UC Davis

Participation in BaMBA is free and open to everyone, but registration
is required. Attendance is limited to 150, and the registration deadline
is Monday November 17th, 2014. Undergraduates, graduates, and post-docs
involved in mathematical and computational investigations of biological
systems are invited to submit an abstract for a poster presentation. For
more information, please visit the BaMBA website at http://bambameeting.org/ .

Sincerely,

The BaMBA 9 Organizing Committee:
Javier Arsuaga (Mathematics and Molecular & Cellular Biology, UC Davis) -
jarsuaga@ucdavis.edu
Sami Khuri (Computer Science, SJSU)
Michael Levitt (Computational Structural Biology, Stanford)
Mariel Vazquez (Mathematics and Microbiology & Molecular Genetics, UC Davis)
-mariel@math.ucdavis.edu


----------------------------------------------------

From: Sharon Stack <Sharon.Stack.11@nd.edu>
Date: Wed, Nov 5, 2014 at 11:31 AM
Subject: Gordon Research Conference on Matrix Metalloproteinase

Gordon Research Conference on Matrix Metalloproteinases
August 2-7, 2015, Sunday River Resort, Newry, ME
Chair:  M. Sharon Stack, University of Notre Dame
Vice-Chair:  Howard C. Crawford, Mayo Clinic FL
See: http://www.grc.org/programs.aspx?id=12358


----------------------------------------------------

From: Catherine Crawley <ccrawley@nimbios.org>
Date: Thu, Nov 6, 2014 at 4:18 PM
Subject: CfA: Olfactory Modeling, a NIMBioS Investigative Workshop

The National Institute for Mathematical and Biological Synthesis (NIMBioS)
is now accepting applications for its Investigative Workshop, "Olfactory
Modeling," to be held March 2-4, 2015, at NIMBioS.

Objectives: The sense of smell is important for all animals; odors are
associated with identifying and locating food, determining food quality,
and identifying threats. In humans, loss of sense of smell occurs with
normal aging and is associated with a loss in quality of life. A decline
in the ability to detect and discriminate odors also can be a harbinger of
neurodegenerative conditions such as Parkinson's disease and Alzheimer's
disease. Moreover, the olfactory system is an important model system
for exploring neural computation including changes in neural circuits in
response to the environment and experience. The olfactory system provides
specific advantages for understanding learning and memory, one of the
most important goals in neuroscience. Technological advances have led
to a wealth of information about how olfactory coding takes place in the
mammalian nervous system, where experimental approaches range from large-scale
measurement of neural activity during behavior to manipulation of activity
via optogenetics. Integration of these data through comprehensive models
of the neural networks involved in olfactory processing will advance our
understanding of olfaction, including the relationship between neural
activity and behavior. This workshop will review the current state of
the mathematical approaches and tools for modeling olfaction, identify
tasks that will maximize the impact of individual projects, and establish
collaborations for large-scale modeling of this system, with a focus on
incorporating realistic biophysical mechanisms for learning and memory.

Location: NIMBioS at the University of Tennessee, Knoxville

Co-Organizers: Sharon Crook (School of Mathematical and Statistical Sciences
& School of Life Sciences, Arizona State Univ., Tempe) and Brian Smith
(School of Life Sciences, Arizona State Univ., Tempe)

For more information about the workshop and a link to the online application
form, go to http://www.nimbios.org/workshops/WS_olfaction

Participation in the workshop is by application only. Individuals with
a strong interest in the topic are encouraged to apply, and successful
applicants will be notified within two weeks of the application deadline. If
needed, financial support for travel, meals, and lodging is available for
workshop attendees.

Application deadline: December 14, 2014

The National Institute for Mathematical and Biological Synthesis (NIMBioS)
(http://www.nimbios.org) brings together researchers from around the world
to collaborate across disciplinary boundaries to investigate solutions to
basic and applied problems in the life sciences. NIMBioS is sponsored by
the National Science Foundation, with additional support from The University
of Tennessee, Knoxville.


----------------------------------------------------

From: Nicole Steinmetz <nfs11@case.edu>
Date: Thu, Nov 6, 2014 at 6:40 PM
Subject:  2015 Gordon Conference and Seminar, Physical Virology, January 25-30

Join us at the 2015 Gordon Conference and Seminar on Physical Virology
Integrating Global Significance with Atomic Level Understanding
January 25-30, 2015 
GRC Co-Chairs: Trevor Douglas & Nicole Steinmetz
GRC Co-Vice Chairs: Mavis Agbandje-McKenna & Brian Bothner
GRS Chair: Benjamin H. Schwarz   GRS Assoc. Chair: Amy Wen

See https://www.grc.org/programs.aspx?id=13975.


----------------------------------------------------

From: URV - RESEARCH GROUP ON MATHEMATICAL LINGUISTICS <grlmc@urv.cat>
Date: Sun, Nov 9, 2014 at 12:51 PM
Subject: CfP: AlCoB 2015, August 4-6, Mexico City

2nd INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY

AlCoB 2015

Mexico City, Mexico

August 4-6, 2015

Organized by:

Centre for Complexity Sciences (C3)
School of Sciences
Institute for Research in Applied Mathematics and Systems (IIMAS)
Graduate Program in Computing Science and Engineering
National Autonomous University of Mexico

Research Group on Mathematical Linguistics (GRLMC)
Rovira i Virgili University

http://grammars.grlmc.com/alcob2015/


----------------------------------------------------

From: Diane Bosnjak <dbosnjak@aibs.org>
Date: Thu, Nov 6, 2014 at 3:05 PM
Subject: AIBS Invitation to Join

Invitation to join AIBS as an individual member. Help us bring biology
to life.  Working together, we will achieve great things.
See http://eepurl.com/7Mkff.


----------------------------------------------------

From: Graham Donovan <g.donovan@auckland.ac.nz>
Date: Thu, Nov 6, 2014 at 8:49 PM
Subject: PhD Scholarship, Mathematical Biology, University of Auckland

A PhD scholarship is available to work under the supervision of Graham
Donovan and James Sneyd in the Mathematics department at the University of
Auckland, New Zealand. The scholarship pays a stipend and fees, at rates
commensurate with other PhD students in New Zealand.

The project is the construction and analysis of a model of ventilation
patterns in the lungs of asthmatics, and thus draws from both mathematical
biology/physiology, and dynamical systems.

The successful applicants will have a high-quality degree in applied
mathematics, mathematics, engineering, bioengineering, physics, chemistry,
or physiology, or some equivalent experience. Experience with computational
methods is essential.

For more information about Auckland, visit http://www.aucklandnz.com

For more information, or to apply, email your cv and transcript, and a brief
statement about your research interests and experience, to Graham Donovan
(g.donovan@auckland.ac.nz).


----------------------------------------------------

From: Andrei Korobeinikov <akorobeinikov@crm.cat>
Date: Mon, Nov 10, 2014 at 5:01 AM
Subject: PhD Student Position, Mathematical Modelling Viral & Bacterial .., CRM

A PhD student position at the CRM

The CRM (www.crm.cat) welcomes applications for a PhD student within the
programme of Collaborative Mathematical Research. The doctoral training
position is specifically attached to the research group of Mathematical
Epidemiology leaded by Dr. Andrei Korobeinikov, and to work on a project in
mathematical modelling of viral and bacterial evolution. For the general
conditions of the position and the description of the full programme see
http://www.crm.cat/en/Research/Training/CollabMathResearch/Pages/Description.aspx

Candidates' specification: CRM seeks applications from suitably qualified
candidates, who either hold, or expect to obtain by the end of the year
a Master of Science degree in mathematics, physics, or biology (in the
latter case a substantial training in mathematics will be required). Pure
mathematicians interested in application to biology are strongly encouraged
to apply.  Familiarity with computers and basic knowledge of mathematical
modelling as well computational and analytical methods are expected. Knowledge
of biology is not essential.

To apply, you must send to crmcalls@crm.cat an email with personal information
(name, personal address, email, phone number) and attaching the following
documents (please name all attached files including your family name for easy
identification): CV, academic records of bachelor's degree and master's degree
(incorporating, if possible, the computation of the average grade following
the same scheme as for the FI-DGR 2014 call) and a motivation letter. The
deadline to submit an application is November 28, 2014. Applicants should
be available for interviews (possibly via Skype) from December 1st onwards.

Enquiries to akorobeinikov@crm.cat.

CRM has endorsed the EU charter and code for researchers, whose principles
apply to this call.


----------------------------------------------------

From: JTFD (Jeanette From Dack) <jtfd@novonordisk.com>
Date: Tue, Nov 4, 2014 at 3:44 AM
Subject: Postdoc Position, Receptor Pharmacology Team, Novo Nordisk

STAR PostDoc

Our growth is your opportunity Being part of Novo Nordisk Research &
Development means working at one of the world's largest and most successful
biopharmaceutical companies.

Our R&D organisation is vital to Novo Nordisk's continued growth and we
always welcome talented people who would like to grow with us.

Are you interested in data-driven mathematical models as part of translational
research? Are you ready to help us find new GLP-1 analogues which will make
a difference to the lives of millions? Do you want to contribute and share
your new ideas in an engaging working environment?

About the department
The Receptor Pharmacology team is part of the Incretin and Islet Biology
department and based in the Diabetes Research Unit. The department focuses on
in vitro pharmacology and biology related to our incretin-based therapy. The
department functions in close collaboration with departments responsible
for in vivo biology covering both experimental and computational research.

The job One of the main challenges in pharmacology is a poor understanding
of the link between in vitro and in vivo data. Most available assays address
only 'acute'  cellular response and a better understanding of a long time
scale response is needed to predict the effect of drug candidates in patients.

The focus of this 2 year PostDoc project will be to develop a mathematical
model describing long time functional response to GLP-1 analogue stimulation
in beta-cells. The model will be based on in-house and published experimental
data.  If needed, additional experiments will be performed by in-house
experts to support the model development. Simulated long term functional
response will be used to understand and predict in vivo data. Thus, you
will have an opportunity to improve the link between in vitro and in vivo
data - a necessary step to design drugs greatly improving conditions of
patients with diabetes.

You will work in a cross-organizational group consisting of experts
in GLP-1R in vitro and in vivo pharmacology, both experimentalists
and mathematicians. This will ensure idea sharing/brainstorming and your
visibility in the organization with the possibility of pursuing further career
opportunities in Novo Nordisk.  To ensure the state-of-the-art level of the
work the project will be carried out in collaboration with Prof. Susanne
Ditlevsen at Copenhagen University (Denmark) and Prof. Boris Kholodenko
at UCD Conway Institute (Ireland) - world class experts in mathematical
modelling of physiological systems using the systems biology approach.

The project is expected to generate publishable data to be presented by
you at international scientific conferences.

Qualifications
You have a PhD or similar degree/experience in systems biology, computer
science or a related discipline. You have strong computational skills
with focus on mathematical modelling of mechanisms behind cellular
processes. Examples could be receptor activation and signalling, functional
response in primary cells, metabolism etc. Preferably, you are also familiar
with modelling of PK/PD data.  You should not only be able to develop your
models but also to validate them in an experimental context. You are good
at communicating with experimentalists in order to ensure the practical
application of the model. Knowledge of G-protein coupled receptors (GPCRs)
is an advantage but not a must.

This position is designated to attract talented researchers (both foreign
and Danish) from abroad to Denmark.

At Novo Nordisk, we create value by putting patients first. Every ten
seconds two people are diagnosed with diabetes, and more than 371 million
people worldwide need us. Working here is not just a way to make a living,
but a way to make a difference.

Contact
For further information about the job please contact Nikolaj Kulahin at
+45 3075 3829. To apply follow this link:
http://www.novonordisk.com/careers/job_section/jp.asp?jobid=24722BR&joblng=uk&jobcnt=Denmark&type=1a

Deadline
1 December 2014.


----------------------------------------------------

From: Carson, Richard <richard.carson@yale.edu>
Date: Tue, Nov 4, 2014 at 9:46 AM
Subject: Postdoc, Tracer Kinetic Modeling, Positron Emission Tomography, Yale

The Yale University Positron Emission Tomography (PET) Center and Department 
of Diagnostic Radiology of the Yale University School of Medicine, New Haven,
CT, USA, has an opening for a highly qualified and motivated individual at
the post-doctoral level to work on research involving the development and
application of tracer kinetic models with new and current radiotracers for
the quantification of in vivo physiological function in humans, non-human
primates, and rodents.  

Applicants must have obtained a Ph.D. in biomedical engineering, medical
physics, or a related field. Strong experimental, analytical and programming
skills are essential. Experience in image analysis, algorithm development,
and biological applications is highly desirable.

Interested individuals should send a C.V., letter of interest, and a list
of three references to richard.carson@yale.edu.

For more information on the Yale PET Center, please visit our web site,
http://petcenter.yale.edu

Yale University is an Equal Opportunity Employer. Applications from women
and members of minority groups are encouraged.


----------------------------------------------------

From: Monica Dalin Pallanti <pallant@math.upenn.edu>
Date: Thu, Nov 6, 2014 at 10:55 AM
Subject: Postdoc, Mathematical Biology, Simons-University of Pennsylvania

Simons-University of Pennsylvania Postdoctoral Fellowships in Mathematical
Biology

The Departments of Mathematics and Biology at the University of Pennsylvania
invite applications for postdoctoral fellowships at the interface of
mathematics and biology. These positions are open to candidates who have
demonstrated excellence and productivity in research. A Ph.D. or equivalent
degree in Biology, Mathematics, Statistics, Computer Science, or related
fields is required. Highly qualified mathematicians and statisticians wishing
to transition into biology are also encouraged to apply. The fellows will
be encouraged to interact and collaborate with various research groups
on campus. 

Funding for the fellowships will be provided by the Math+X Simons Chair
awarded to Prof. Yun S. Song, who will join the University in Summer 2015.  

Applications should be submitted online through
https://www.mathjobs.org/jobs/Penn/6569/ and include a curriculum vitae
and a research statement. In addition, applicants should arrange to have
three letters of reference submitted online. Review of applications will
begin December 15, 2014 and will continue until the positions are filled.

The Departments of Mathematics and Biology are strongly committed
to Penn's Action Plan for Faculty Diversity and Excellence and
to establishing a more diverse faculty (for more information see:
http://www.upenn.edu/almanac/volumes/v58/n02/diversityplan.html). The
University of Pennsylvania is an EOE. Minorities/Women/Individuals with
disabilities/Protected Veterans are encouraged to apply.


----------------------------------------------------

From: Doe, Aimee <Aimee_Doe@hms.harvard.edu>
Date: Fri, Nov 7, 2014 at 9:59 AM
Subject: Postdoctoral Research Associate, Harvard Medical School

Areas of Interest: Genomic Assays, Chromatin, Computational Biology.

Job Description: A laboratory at the Center for Biomedical Informatics at
the Harvard Medical School (HMS) is looking for a postdoctoral Research
Associate  to conduct both bench-side and computational analysis of
epigenetic state as part of a new Center of Excellence in Genomic Science
(CEGS) NIH initiative on neuropsychiatric disorders. The Research Associate
will be responsible for developing and applying novel chromatin analysis
assays to examine regulatory differences in patient-derived cell lines and
other disease models. The Research Associate will also contribute to the
integrative computational analysis of the resulted data. The project will
provide an excellent opportunity to collaborate with a number of prominent
labs that are taking part in the CEGS initiative. 

Requirements:

-  A strong interest in conducting collaborative research on the topics
   outlined above

-  PhD degree in Molecular Biology, Computational Biology, or a related
   discipline.

-  Hands-on experience with DNA or RNA sequencing assays

-  Experience in computational analysis of genomic data

-  Track record of publications in peer-reviewed journals


How to apply: Please send cover letter, curriculum vitae and contact
information for at least two references to Dr. Peter Kharchenko at
peter.kharchenko@post.harvard.edu. Applications will be considered until
the position is filled.

Employer: Center for Biomedical Informatics promotes and facilitates
collaborative activities in biomedical informatics among researchers at
HMS and its affiliated institutions. Its core faculty members conduct
research at the intersection of biomedicine and information sciences,
including bioinformatics, functional genomics, translational medicine, and
clinical knowledge management.  The center also hosts the Bioinformatics &
Integrative Genomics program (a graduate training program, sponsored by NHGRI)
and the Biomedical Informatics Research Training program (a consortium of
informatics laboratories at Harvard and MIT, sponsored by NLM).

Harvard Medical School is an Equal Opportunity/Affirmative Action Employer.
Women and minorities are especially encouraged to apply.


----------------------------------------------------

From: Roger Kouyos <roger.kouyos@uzh.ch>
Date: Mon, Nov 10, 2014 at 1:27 PM
Subject: Postdoc Position, Computational HIV Vaccinology, University of Zurich

Postdoc position: Computational HIV Vaccinology (University of Zurich)
We are looking for a highly motivated Postdoc with a strong quantitative
background to work on a project at the interface of bioinformatics, virology,
and the immunology of HIV. The project is based on unique immunological and
clinical data from the Swiss HIV Cohort Study (www.shcs.ch), the Zurich
Primary HIV Study (http://www.viralinfectiousdiseases.uzh.ch/ZPHI.html)
and currently running high-throughput experimental analyses. The project
aims to identify the determinants of antibody-neutralization in HIV and is
funded for 3 years. This highly interdisciplinary and translational project is
a close collaboration between the Institute of Medical Virology (University of
Zurich, Alexandra Trkola), the Division for Infectious Diseases (University
Hospital Zurich, Huldrych Günthard & Roger Kouyos), and the Institute for
Integrative Biology (ETH Zurich, Roland Regoes). This position provides:
1) A highly interdisciplinary and translational research environment with
links both to clinical practice and basic science. 2) Strong interactions
with leading experimental and theoretical groups. 3) Unique immunological and
clinical data and the opportunity to shape follow-up experimental analysis
on a key question in HIV vaccinology.  

The analysis of these complex data requires mathematical and bioinformatics
approaches beyond standard statistics. Accordingly, the applicant should
have strong quantitative/computational skills and hold a PhD in a discipline
relevant to the project (e.g. Bioinformatics, Bio-Statistics, Bio-Mathematics,
or Life-Sciences with a strong quantitative or computational component).

Start date: As soon as possible.

Applicants should send a cover letter, a detailed CV, a list of their
publications, and contact information for two or three academic references
to: roger.kouyos@uzh.ch.


----------------------------------------------------

From: Michie, Eileen M. <eileen.michie@njit.edu>
Date: Thu, Nov 6, 2014 at 1:30 PM
Subject: Assistant/Associate/Full Professor, Applied Mathematics, NJIT

Assistant/Associate/Full Professor in Applied Mathematics
Department of Mathematical Sciences

The Department of Mathematical Sciences (DMS) at the New Jersey Institute
of Technology seeks candidates to fill a tenure-track/tenured position at
the Assistant/Associate/Full Professor level in the general area of Applied
Mathematics. Candidates are sought from all fields of Applied Mathematics.  
The Department is particularly interested in candidates whose research
interests are consistent with the existing research strengths in scientific
computation/numerical analysis, modeling/asymptotic analysis, PDE's and
dynamical systems, with focused research groups in applications to fluid
dynamics , mathematical biology, and wave propagation.  

DMS has experienced tremendous growth in research over the past two
decades, and is now recognized as having a leading national program in
applied mathematics.  The department offers B.S., M.S., and Ph.D. degrees,
with Ph.D. program tracks in Applied Mathematics as well as in Applied
Probability & Statistics. For more information about DMS faculty and programs,
visit http://math.njit.edu.

Candidates should have a Ph.D. in Applied Mathematics or a related field
and postdoctoral experience with strong research and teaching potential for
consideration at the Assistant Professor level and an appropriate record
of accomplishment in classroom teaching, mentoring doctoral students and
research publication and funding for consideration at the Associate or
Full Professor level. At the university's discretion, the prerequisites
may be excepted where the candidate can demonstrate to the satisfaction of
the university an equivalent combination of education and experience that
prepares the candidate for success in the position.

Please visit https://njit.jobs, posting number 0602414, to apply. Submit
a cover letter, resume/CV, research and teaching statements, a summary of
teaching evaluations (if available), and names and contact information of
three references. Review of applications will begin on November 15, 2014
and will continue until the position is filled.

To build a diverse workforce, NJIT encourages applications from individuals
with disabilities, minorities, veterans and women. EEO employer.


----------------------------------------------------

From: Karin S. Dorman <kdorman@iastate.edu>
Date: Thu, Nov 6, 2014 at 5:26 PM
Subject: Open Rank Position, Statistical Bioinformatics, Iowa State University

Open Rank Position in Statistical Bioinformatics at Iowa State University

As part of a Bioinformatics and Computational Biology (BCB) hiring initiative,
the Department of Statistics at Iowa State University seeks outstanding
applicants for an open-rank faculty position in the area of statistical
bioinformatics. We are especially interested in a candidate who can contribute
to the development of statistical methodology and computational strategies for
large, complex biological datasets, collaborate with biological scientists,
and enhance Iowa State University's efforts in bioinformatics education and
research through leadership and vision. Areas of interest include, but are
not limited to, genomics, proteomics, and other omics, regulatory networks,
systems biology, and biological data integration.

Duties include teaching undergraduate and graduate level courses, graduate
student advising, professional and institutional service, developing and
sustaining a high-impact research program that can successfully compete for
external funding, and participating in collaborative research to address
scientific problems involving bioinformatics and computational biology.

**Required Education and Experience
Ph.D. in statistics, bioinformatics, or a closely related field.
Associate and Full Professor: In addition, the candidate must have documented
teaching experience commensurate with university standards and an outstanding
research record as demonstrated by peer-reviewed publications and external
research support or equivalent experience at corporate or federal research
centers.

**Preferred Education and Experience
Experience that demonstrates the ability to teach statistics or bioinformatics
courses at all levels
Experience developing statistical methodologies for analyzing complex, high
through-put biological data.
Demonstrated ability to publish in top tier research journals
Demonstrated ability to secure research funding
Experience collaborating with biological scientists
Demonstrated ability to lead interdisciplinary educational or research
initiatives

**Department/Program & College Description
The doctoral program in Statistics is ranked as one of the top programs
in the country graduating about 15 PhD students annually. The program
currently has about 140 graduate students, 100 undergraduate majors, and
38 faculty. Faculty and students have traditionally maintained strong
collaborations across campus.  The Statistics Department is located in
Snedecor Hall, which received an extensive renovation in 2009. Further
information about the department can be found at http://www.stat.iastate.edu

**About Iowa State University and the Ames Community
Iowa State University is classified as a Carnegie Foundation Doctoral/Research
University-Extensive, a member of the Association of American Universities
(AAU), and ranked by U.S. News and World Report as one of the top public
universities in the nation. Over 34,000 students are enrolled, and served
by over 6,100 faculty and staff (see www.iastate.edu). Ames, Iowa is a
progressive community of 60,000, located approximately 30 minutes north of
Des Moines, and recently voted second best most livable small city in the
nation (see www.amescvb.com).

Iowa State University is an equal opportunity employer committed to excellence
through diversity and strongly encourages applications from all qualified
applicants, including women, underrepresented minorities, and veterans. ISU
is responsive to the needs of dual career couples, is dedicated to work-life
balance through an array of policies, and is an NSF ADVANCE institution.

All faculty members are expected to exhibit and convey good citizenship
within the program, the department, college, and university activities and
collegial interactions, and maintain the highest standards of integrity
and ethical behavior.

Department Contact Name   Karin Dorman
Department Contact Phone  515-294-1457
Department Contact Email  statbcbsearch@iastate.edu
Department Address
   Department of Statistics
   Iowa State University
   Ames, IA 50011
Department/Unit Website   http://www.stat.iastate.edu

**Additional Information
The College of Liberal Arts and Sciences (www.las.iastate.edu)
at Iowa State University (ISU) has begun a major interdisciplinary
hiring initiative (www.las.iastate.edu/faculty-careers) to help foster
collaborative research and teaching, especially in its Signature Themes
(www.las.iastate.edu/research/signature-themes/). As part of this initiative,
the Departments of Computer Science (www.cs.iastate.edu), Mathematics
(www.math.iastate.edu) and Statistics (www.stat.iastate.edu) have launched
a new multi-year hiring effort to expand research and education in the
area of Bioinformatics and Computational Biology (BCB). This initiative
is further supported and complemented by several other simultaneous new
hiring efforts, especially targeting the themes of Data-Rich Environments
and Biology Structures & Systems, as well as recent big data hires in the
biological and engineering sciences.


----------------------------------------------------

From: "Owens, Roland (NIH/OD) [E]" <owensrol@mail.nih.gov>
Date: Sat, 8 Nov 2014 00:31:50 +0000
Resent-from: Raymond Mejía <mejiar@helix.nih.gov>
Subject: Selected NIH Intramural Research and other Positions - November Update

Staff Scientist, Computational Biology
Lymphoid Malignancies Branch, NCI
(deadline: November 14)

The Staudt laboratory in the Lymphoid Malignancies Branch,
National Cancer Institute, utilizes genomics to understand the
pathogenesis of human lymphoid malignancies and to improve their therapy
(https://ccr.cancer.gov/louis-m-staudt).  The laboratory seeks to appoint
an outstanding computational biologist as a Staff Scientist to lead
the analysis of the diverse genomics datasets that are generated by the
laboratory.  Our structural genomics efforts use RNA-seq, exome-seq, targeted
resequencing, and array CGH to define the driver genetic events in lymphomas
(e.g. Schmitz et al.  Nature 490:116 2012).  The laboratory also uses various
functional genomics methodologies to identify essential genes and pathways
in these cancers, including genetic screens based on RNA interference and
CRISPR/Cas9-based gene inactivation (e.g. Ngo et al. Nature 470:115 2010).
We also use ChIP-seq to identify master regulators of lymphoma biology that
can be targeted therapeutically (e.g. Yang et al. Cancer Cell 21:723 2012).
The work of the laboratory is ultimately translated into clinical trials,
which further entail the analysis of biopsy samples to understand the
mechanisms of response and resistance to therapy.

Because of the diversity of these datasets, we seek a creative and experienced
computational scientist with a background in biology and/or bioinformatics
who can devise new computational solutions for these various initiatives
in the laboratory.  Candidates must have a Ph.D. degree in bioinformatics,
computational biology, computer science, or a closely related field, or
equivalent experience.  Experience in computer algorithm development to solve
problems in genomics is a plus as is experience in managing and analyzing
very large datasets.  Applicants must have strong communication skills, be
fluent in both spoken and written English, and be able to work independently
to achieve laboratory goals.  Appointees may be US Citizens, resident aliens
or non-resident aliens with or eligible for a valid employment visa.

The 16-member Staudt laboratory is housed on the Bethesda campus of the
NIH, enabling rich scientific interactions and collaborations with the
many neighboring laboratories.  The funding for this position is stable,
making this an attractive, long-term opportunity to utilize computational
expertise and creativity to improve the diagnosis and treatment of cancer.
Salary will be commensurate with experience and qualifications.  Please send
your curriculum vitae, a description of relevant experience, and contact
information for three references to Dr. Louis M. Staudt at: Louis M. Staudt,
M.D., Ph.D.; c/o Arlene Dyer; NCI Center for Cancer Genomics; Bldg. 31,
Rm. 10A11; 9000 Rockville Pike; Bethesda, MD 20892; or dyera@mail.nih.gov.
DHHS and NIH are equal opportunity employers and encourage applications
from women and minorities.


Biostatistician
Lister Hill National Center for Biomedical Communications, NLM
(deadline: November 15)

The National Library of Medicine (NLM) is recruiting a Biostatistician
to work in one of its research and development divisions, the Lister Hill
National Center for Biomedical Communications. The Lister Hill Center (LHC),
which is part of the National Institutes of Health in Bethesda, MD, conducts
research in a large variety of imaging, natural language, machine learning,
computer science and other techniques and studies their accuracy and utility
in research projects. We also do research on the use statistical methods
to find important predictors of outcomes in large (hundreds to billions of
records), de-identified, medical record, and clinical data bases.   

JOB DUTIES: The successful candidate will collaborate with LHC scientists
(including physicians, engineers and computer scientists) in the design
of formal studies and analysis of their techniques and in the analysis of
very large longitudinal clinical databases, using various regression and
survival models to find significant predictors of important outcomes. The
biostatistician will participate in the development of statistical tools for
large clinical databases and analysis of the data extracted from them for
specific studies.  He/she will also consult with LHC researchers and promote
efficient study planning and design through education and collaboration. From
time to time he/she may also advise the ClinicalTrials.gov project regarding
issues related to submissions of clinical trials results into their database. 

QUALIFICATIONS: We are looking for applicants with doctoral degrees in
biostatistics with strong academic training in methodology, success in
publication, and experience with analysis of clinical and medical record data
as well, experience in study design and in regression and survival analysis.
Interest or experience with SAS is required and with R programming language,
desired. Excellent verbal and written communication skills as well as
effective interpersonal skills are also essential. 

Salary for this position is commensurate with research experience. Candidates
appointed through the excepted service under the Title 42 authority need
not be U.S. citizens. The successful candidate will be working with
Dr. Clement McDonald, Director of the Lister Hill National Center for
Biomedical Communications. These positions are subject to a background
investigation. To apply, please submit your curriculum vitae, including
a description of your education and experience, and three letters of
recommendation to Peggy Slovikosky by email or regular mail. E-mail
address: pslovikosky@mail.nih.gov.  Postal address: Lister Hill National
Center for Biomedical Communications; Attention: Peggy Slovikosky, AO,
LHNCBC; Building 38A - Room 7N707 - MSC 3828; 8600 Rockville Pike; Bethesda,
MD 20894.  Applications must be received no later than November 15, 2014.
DHHS and NIH are equal opportunity employers.


Early Independent Scientists
NIH Intramural Research Program
(deadline: December 12)

The National Institutes of Health, the nation's premier agency for biomedical
and behavioral research, is recruiting for Early Independent Scientists in
the NIH Intramural Research Program (IRP). We are looking for new Ph.D.,
M.D., D.D.S. and equivalent doctoral researchers who have the creativity,
intellect and maturity to flourish in an independent research position.

The IRP is home to almost 1,100 tenured and tenure-track investigators
and 5,000 trainees. We provide an environment that encourages and supports
innovative, high-impact research. To enhance the development and early-stage
careers of exceptional investigators, the IRP is participating in the
NIH Common Fund's 'NIH Director's Early Independence Award' program,
http://commonfund.nih.gov/earlyindependence/. The NIH has developed this
program to support recent doctoral graduates in independent positions
without the need to perform a post-doctoral career fellowship. Thus, the
graduate can immediately start an independent career after graduation. 
Successful Early Independence Award candidates will be provided the resources
to establish an independent research program, including salary and benefits,
support for lab personnel, lab space, supplies, and start-up equipment. 

Complete applications must be received by December 12, 2014. Candidates
should submit electronically a cover letter, curriculum vitae, and a 3-page
statement of research interests and future plans, and arrange to have 3
letters of reference sent to: Charles Dearolf, Ph.D.; Assistant Director for
Intramural Research; National Institutes of Health; dearolfc@od.nih.gov. The
NIH will notify selected candidates shortly thereafter, and work with
the candidates to submit an application to the NIH Common Fund program by
the expected deadline at the end of January, 2015. Candidates must meet
eligibility requirements of the Common Fund program. At the time of this
application, candidates must be within 12 months of completing their Ph.D.,
M.D. or D.D.S. degree, or for clinician-scientists within twelve months of
completing their core clinical residency program.

The NIH recognizes a unique and compelling need to promote diversity in the
biomedical, behavioral, clinical and social sciences research workforce. The
NIH expects its efforts to diversify the workforce to lead to the recruitment
of the most talented researchers from all groups. We encourage applications
from talented researchers from diverse backgrounds underrepresented in
biomedical research, including underrepresented racial and ethnic groups,
persons with disabilities, and women for participation in all NIH-funded
research opportunities.


Link to Fellowships and Positions of Interest to fellows
https://www.training.nih.gov/
https://www.training.nih.gov/career_services/jobs


----------------------------------------------------

Subject: SMBnet Reminders

To subscribe to the SMB Digest please point your browser at
    https://list.auckland.ac.nz/sympa/info/math-smbnet
and complete the subscription information.  Alternatively, if you prefer
to simply receive notice when the next issue is available, send mail to
    LISTSERV@listserv.biu.ac.il  with  "subscribe SMBnet Your Name"
in the body of the mail (omit the quotes and include your name).
After you subscribe, you will receive a greeting with additional information.

Submissions to appear in the SMB Digest should be sent to
    SMBnet(at)smb(dot)org .

Items of interest to the mathematical biology community may be submitted
for inclusion in the SMBnet archive.  See instructions at
    http://smb.org/publications/SMBnet/pubs/fyi .

The SMB Digest is also available on the SMB Home Page at
    http://smb.org/publications/SMBnet/digest/ .

The contents of this publication may be reproduced in whole or in part with
attribution.

End of SMB Digest
****************************************************

----------------------------------------------------