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Subject: Society for Mathematical Biology Digest
SMB Digest October 21, 2014 Volume 14 Issue 43
ISSN 1086-6566
Editor: Ray Mejía ray(at)smb(dot)org
Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
http://www.smb.org/ .
Access the Bulletin of Mathematical Biology, the official journal of SMB, at
http://www.springer.com/11538 .
Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org .
Issue's Topics:
Bi-Monthly News from NIMBioS
CfP: Synthetic and Systems Biology Summer School, July 5-9, Taormina
ACM-SIAM Symposium on Discrete Algorithms (SODA15)
Journal of Mathematical Neuroscience - recent articles
Dear Colleague Letter on the Ebola Virus from the Director of NSF
Postdoctoral Position, Mathematical Biological Chemistry, Michigan
Postdoc, Mathematical Microbial Ecology, Cinvestav, Monterrey, Mexico
Postdoc, Theoretical Neuroscience of Alcohol Addiction, France-USA
Faculty Position, Applied Mathematics & Statistics ..., Quest U
SMBnet Reminders
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From: NIMBioS <
newsletter@nimbios.org>
Date: Wed, Oct 15, 2014 at 9:56 AM
Subject: Bi-Monthly News from NIMBioS
See
http://archive.constantcontact.com/fs105/1102610363105/archive/1118780331395.html
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From: Luc Morabitos <
luc.morabitos@gmail.com>
Date: Sun, Oct 19, 2014 at 4:32 AM
Subject: CfP: Synthetic and Systems Biology Summer School, July 5-9, Taormina
Synthetic and Systems Biology Summer School: Biology meets Engineering and
Computer Science - 2nd Edition
Taormina - Sicily, Italy, July 5-9, 2015
http://www.taosciences.it/ssbss2015/
ssbss.school@gmail.com
** Deadlines **
Student Application: February 15, 2015
Oral/Poster Submission: February 15, 2015
The Synthetic and Systems Biology Summer School (SSBSS) is a full-immersion
course on cutting-edge advances in systems and synthetic biology with lectures
delivered by world-renowned experts. The school provides a stimulating
environment for doctoral students, early career researches and industry
leaders. Participants will also have the chance to present their results
(Oral presentations or Posters) and to interact with their peers.
** Topics **
Genetic Engineering
Metabolic Engineering
Genome Design
Reading and Writing Genomes
Pathway Design
Synthetic Circuits and Cells
Biological CAD
Industrial Applications
Artificial Tissues and Organs
Genomically recoded Organisms
Biological Design Automation
** List of Speakers **
* Adam Arkin, University of California Berkeley, USA
* Jef Boeke, New York University, USA
* Angela DePace, Harvard University, USA
* Forbes Dewey, MIT, USA
* Paul Freemont, Imperial College London, UK
* Karmella Haynes, Arizona State University, USA
* Richard Kitney, Imperial College London, UK
* Timothy Lu, MIT, USA
* Philip Maini, Oxford University, UK
* Steve Oliver, Cambridge University, UK
* Greg Stephanopoulos, MIT, USA - TBC
* Nicola Zamboni, ETH, Switzerland
Other speakers will be announced soon.
** Industrial Panel **
* Zach Serber, Zymergen, Inc. USA
More speakers will be announced soon!
School Directors
Jef D. Boeke, New York University, USA
Giuseppe Nicosia, University of Catania, Italy
Mario Pavone, University of Catania, Italy
Giovanni Stracquadanio, University of Oxford, UK
** Short Talk and Poster Submission **
Students may submit a research abstract for presentation. School directors
will review the abstracts and will recommend for poster or short-oral
presentation. Abstract should be submitted by February 15, 2015. The
abstracts will be published on the electronic hands-out material of the
summer school.
http://www.taosciences.it/ssbss2015/index.html#applicationForm
http://www.taosciences.it/ssbss2015/
ssbss.school@gmail.com
----------------------------------------------------
From: Kirsten Wilden <
Wilden@siam.org>
Date: Wed, Oct 15, 2014 at 11:58 AM
Subject: ACM-SIAM Symposium on Discrete Algorithms (SODA15)
Conference Name:
ACM-SIAM Symposium on Discrete Algorithms (SODA15)
Algorithm Engineering and Experiments (ALENEX15) and Analytic Algorithmics
and Combinatorics (ANALCO15) will take place at the same location, and will
hold sessions during the SODA conference.
SODA is jointly sponsored by the ACM Special Interest Group on Algorithms and
Computation Theory and the SIAM Activity Group on Discrete Mathematics.
Location:
Westin San Diego Gaslamp Quarter, San Diego, California, USA
Dates:
January 4-6, 2015
Program Committee Chair:
Piotr Indyk, Massachusetts Institute of Technology, USA
Invited Speakers:
Avrim Blum, Carnegie Mellon University, USA
Claire Mathieu, CNRS, École Normale Supérieure, France
Peter Winkler, Dartmouth College, USA
Registration and the conference program are now posted at
http://www.siam.org/meetings/da15/
----------------------------------------------------
From: Stephen Coombes <
Stephen.Coombes@nottingham.ac.uk>
Date: Fri, Oct 17, 2014 at 8:27 AM
Subject: Journal of Mathematical Neuroscience - recent articles
Dear all,
The Journal of Mathematical Neuroscience publishes research articles on
the mathematical modeling and analysis of all areas of neuroscience. The
current list of journal articles is available
at
http://www.mathematical-neuroscience.com/ :
Numerical Bifurcation Theory for High-Dimensional Neural Models
Laing CR
http://www.mathematical-neuroscience.com/content/4/1/13
Adaptation and Fatigue Model for Neuron Networks and Large Time Asymptotics
in a Nonlinear Fragmentation Equation
Pakdaman K, Perthame B and Salort D
http://www.mathematical-neuroscience.com/content/4/1/14
Network Symmetry and Binocular Rivalry Experiments
Diekman CO and Golubitsky M
http://www.mathematical-neuroscience.com/content/4/1/12
Effects of Synaptic Plasticity on Phase and Period Locking in a Network of
Two Oscillatory Neurons
Akcay Z, Bose A and Nadim F
http://www.mathematical-neuroscience.com/content/4/1/8
and see also the recent Special Issue on Uncertainty and the Brain
http://www.mathematical-neuroscience.com/series/UB
All articles are Open Access.
Best regards, Steve
----------------------------------------------------
From: Tie Luo <
tluo@nsf.gov>
Date: Mon, Oct 20, 2014 at 4:54 PM
Subject: Dear Colleague Letter on the Ebola Virus from the Director of NSF
October 16, 2014
Dear Colleague,
In light of the recent emergence of the lethal Ebola virus in the US,
the National Science Foundation (NSF) is accepting proposals to conduct
non-medical, non-clinical care research that can be used immediately to
better understand how to model and understand the spread of Ebola, educate
about prophylactic behaviors, and encourage the development of products,
processes, and learning that can address this global challenge.
I invite researchers to use the Rapid Response Research (RAPID) funding
mechanism, which allows NSF to receive and review proposals having a severe
urgency with regard to availability of, or access to data, facilities or
specialized equipment, as well as quick-response research on natural or
anthropogenic disasters and similar unanticipated events.
Complete guidance on submitting a RAPID proposal may be found here:
http://www.nsf.gov/pubs/policydocs/pappguide/nsf14001/gpg_2.jsp#IID1.
Sincerely,
Dr. France A. Córdova
Director
----------------------------------------------------
From: Santiago Schnell <
schnells@umich.edu>
Date: Thu, Oct 16, 2014 at 2:30 PM
Subject: Postdoctoral Position, Mathematical Biological Chemistry, Michigan
Position: Postdoctoral Research Fellow
Location: University of Michigan Medical School
Salary: NIH National Research Service Award Stipends for Postdoctoral Career
Level (
http://grants.nih.gov/grants/guide/notice-files/NOT-OD-14-046.html)
Contract: Full time appointment renewable on yearly basis for 4 years
Description: Prof. Santiago Schnell is announcing an opening of a postdoctoral
position to work in the area of computational and mathematical biological
chemistry in his research group (
http://www.med.umich.edu/schnell-lab/). The
postdoctoral fellow will work specifically on investigating protein
aggregation reaction mechanisms associated with protein folding diseases.
Candidates should have experience in the mathematical modeling and numerical
solutions of differential equations, and an understanding of biochemical
kinetics, biochemistry and cell biology. Experience with molecular modeling
would be a plus. This position would suit individuals who have a first degree
in mathematics, physics, chemistry, engineering or biomedical sciences,
and a PhD in applied mathematics, systems biology, biophysics, theoretical
physical-chemistry, biomedical or chemical engineering. Candidates must
enjoy working in a team and have a meticulous approach to their work. They
must have experience writing publications and very good communication
skills. The research fellow will interact with our experimental collaborators
at the University of Michigan, and will have the opportunity to train in
experimental techniques.
How to apply: Applications, including a full CV, a cover letter explaining
suitability for the position and how the candidate satisfies the selection
criteria, and the names and addresses of two referees should be sent to Prof.
Santiago Schnell (E-mail:
schnells@umich.edu). Candidates must arrange
for their referees to send references directly to Prof. Santiago Schnell
(email is sufficient).
Review of applications will continue until the position is filled.
----------------------------------------------------
From: Moisés Santillán Zerón <
moises.santillan@me.com>
Date: Fri, Oct 17, 2014 at 12:07 AM
Subject: Postdoc, Mathematical Microbial Ecology, Cinvestav, Monterrey, Mexico
Postdoctoral position to fill at Cinvestav (Monterrey, Mexico), to work on
a project on mathematical microbial ecology.
We are looking for an enthusiastic scientist to develop mathematical models
for microbial ecology, with data obtained from the Cuatro Cienegas (Mexico)
ecological reserve.
The ideal candidates will have a strong background in mathematical modeling,
a recent PhD in a related field, and a strong interest to collaborate with
experimental biologists and theoreticians. Strong programming skills in
Matlab are mandatory, while additional experience in programs like C/C++
or Python is desirable. Experience with partial differential equations
(reaction-diffusion equations) is also expected.
The project will entail constant feedback and cooperation with experimental
biologist. Thus, the postdoc is expected to have excellent personal and
communication skills, and to communicate research to interdisciplinary
audiences.
The successful candidate will join the Computational and Systems Biology Lab
at Cinvestav Monterrey, and will work under the supervision of Prof. Moises
Santillan. Details of our lab can be found in (
http://msantillan.org.mx).
The position will be available in January 2015, but starting date is
negotiable.
To apply please submit CV, names of references, and inquiries to Prof. Moises
Santillan at
msantillan@cinvestav.mx
----------------------------------------------------
From: Boris <
boris.gutkin@ens.fr>
Date: Mon, Oct 20, 2014 at 6:51 AM
Subject: Postdoc, Theoretical Neuroscience of Alcohol Addiction, France-USA
A postdoctoral position is available for a USA-France collaborative project on
the influence of alcohol on the central dopamine system. The project combines
computational and experimental techniques. The post-doc will design and analyze
a biophysical computational models of the brain circuitry affected by alcohol.
The position is available immediately for up to three years. The position is
based at the Group for Neural Theory, Ecole Normale Superieure Paris France,
with extensive research visits between two institutions: Indiana
University-Purdue University at Indianapolis, Indiana, USA, and École Normale
Supérieure, Paris, France. In Paris, he or she will work with Prof. Gutkin
(Group of Neural Theory, ENS) and Prof. Mamelli (Institut du Fer a Moulin,
INSERM) on circuit level models. In Indianapolis, the post-doc will work with
Prof. Kuznetsov (Mathematics Dept.) and Prof. Lapish (Psychology Dept.) on
cellular level models. Both locations provide an excellent environment for
collaborative research in quantitative biosciences. Ample travel support,
competitive salary and full social coverage is offered.
Qualifications: Applicants should have a Ph.D. in Computational Neuroscience,
Mathematics, Physics, or a quantitative field, a background in dynamical
systems, programming experience and working knowledge in Computational
Neuroscience.
How to Apply: Send your CV, list of publications, research statement, and
contact information for three references to Prof. Boris Gutkin via e-mail:
boris.gutkin@ens.fr.
----------------------------------------------------
From: Marjorie Wonham <
Marjorie.Wonham@questu.ca>
Date: Thu, Oct 16, 2014 at 10:06 PM
Subject: Faculty Position, Applied Mathematics & Statistics ..., Quest U
Title: Faculty position in Applied Mathematics & Statistics, or Quantitative
Sciences, Quest University Canada
About the position: Quest University Canada invites applicants for a
full-time continuing faculty position in applied statistics and mathematics,
or quantitative sciences. The successful candidate will have an interest in
and ability to apply statistical and mathematical tools to a broad array
of applied and theoretical problems across disciplines. This ability may
stem from a variety of academic backgrounds (including but not limited to
statistics, mathematics, psychology, physical sciences, life sciences and/or
humanities). A passion for teaching courses and mentoring student projects
is required, along with exemplary communication and collaboration skills.
The applicant must be able to teach within our current Foundation
program, and to be willing to teach our interdisciplinary milestone courses
(Cornerstone, Keystone, Question, and/or Rhetoric). The applicant will develop
Concentration courses in areas including research design, quantitative
sciences, applied statistics, and applied mathematical modeling, that
complement and contribute to our existing offerings. Please see the Course
Calendar for further information on our courses, and the Faculty Directory
for a description of current faculty areas of interest.
About Quest: Quest University Canada offers an interdisciplinary undergraduate
liberal arts and science degree. Our courses, which run on a block schedule
and are limited to 20 students, are intensive and highly interactive. Faculty
members collaborate frequently across disciplines in curriculum development,
teaching, mentoring, and pedagogical innovation. Further details about
Quest and the application procedure can be found under Information for
Faculty Applicants.
Applicant requirements: Candidates must have completed a PhD or equivalent
by the time of appointment, and are expected to have taught at least one
university-level course. (Candidates with less experience may wish to
consider applying for our Post-doctoral Teaching Fellowships.) All Quest
faculty members engage in scholarship, and are encouraged to conduct
research involving undergraduates, but those seeking a research-focused
position should not apply.
To apply, please submit a single .pdf file that includes:
1. A cover letter that explains what excites you most about this position;
2. A curriculum vitae;
3. A statement of how you see your strengths contributing to the
undergraduate teaching and mentoring mission of the University, and
to this position in particular;
4. A brief summary of your research background and interests, in the
format or medium of your choosing (for a large-size or web-based
submission, please provide a link to a url for access or download;
please do not submit large files (>5MB) via email);
5. The name and contact information for three references
Applications should be emailed to
quantitative@questu.ca by November 17th,
2014. Interviews for finalists will begin in December/January 2015. The
start date for the position will be August 1st, 2015. Hiring for this
position is subject to budgetary approval.
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Subject: SMBnet Reminders
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End of SMB Digest
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