SMB Digest April 8, 2014 Volume 14 Issue 15
ISSN 1086-6566
Editor: Wandi Ding wding1(at)gmail(dot)com
Note:
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application for membership, may be found in the SMB Home Page,
Access the Bulletin of Mathematical Biology, the official journal
Inquiries about membership or BMB fulfillment should be sent to
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Issue's Topics:
ERASysApp training event, Larnaca, Cyprus, October 6-10
NETTAB 2014 and Crystal (cl)Year, Italy, October 15-17
Bi-Monthly News from NIMBioS
10 PhD studentships: King's College London
Postdoc Position: Newcastle University
Postdoc Position: University of Ottawa
Postdoc Position: University of Rochester
Postdoc Position: University of Notre Dame
Postdoc in NYC: Developmental Systems Biology
Postdoc Position: University of Tokyo
SMBnet Reminders
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Date: Wed, Apr 2, 2014 at 5:05 PM
Subject: ERASysApp training event, Larnaca, Cyprus, October 6-10
ERASySAPP will hold a course on "Stoichiometric and Kinetic Modelling
of Biochemical Networks" which will take place in Larnaca, Cyprus
from October 6-10, 2014.
We would like to invite you to join this interactive training
experience. During one week the participants will be introduced to
modelling basics and learn how to combine experiments with different
modelling approaches. Well-known lecturers will show how an
appropriate modelling approach can be chosen and introduce suitable
tools. Hands-on training and group works will offer plenty of
possibilities to practice newly gained knowledge. In the afternoon,
participants will have ample time to explore sunny Cyprus, before
classes continue in the early evening.
Students and researchers with a background in biology, bioinformatics,
biochemistry or bioengineering are welcome to attend. No preliminary
knowledge in modelling is required.
This training event is organized and sponsored by ERASysAPP. The
registration fee for the course is EUR 100 and covers training,
lunches, dinners and coffee breaks. Accommodation is not included
and needs to be booked separately.
For more information on the program and registration please visit
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Date: Wed, Apr 2, 2014 at 4:21 AM
Subject: NETTAB 2014 and Crystal (cl)Year, Italy, October 15-17
NETTAB 2014
*From high-throughput structural bioinformatics to integrative
systems biology*, October 15-17, 2014, Molecular Biotechnology
*Keynote Speakers*
- Wolfgang Marwan, Otto-von-Guericke Universität, Magdeburg, Germany
- Ram Samudrala, University of Washington, Seattle, USA
- Torsten Schwede, University of Basel, Switzerland
- Ada Yonath, Weizmann Institute of Science, Rehovot, Israel (Nobel
Laureate)
*Important dates*
- Submission of abstracts for oral communications: July 21, 2014
- Submission of abstracts for posters: September 1, 2014
- Early registration deadline: July 31, 2014
*Instructions for abstract submission*
Authors are invited to submit abstracts through EasyChair at:
Abstract length should not exceed 4 pages for oral communications
and 2 pages for posters. Accepted abstracts will be printed in the
conference proceedings.
*Post-workshop publication*
Two special issues will appear as supplements of BMC Bioinformatics
and of BMC Systems Biology. The related Call for papers will be
launched shortly after the workshop.
*Chairs*
Francesca Cordero (University of Torino, Italy)
Paolo Romano (IRCCS AOU San Martino, Italy)
Torsten Schwede (University of Basel, Switzerland)
*Under the Patronage of* (confirmed only)
- Italian Society of Bioinformatics (BITS)
- Rete Ligure di Bioinformatica (ReLiB)
*2014: Crystal (cl)Year*
October 16-17, 2014, Molecular Biotechnology Center (MBC), Turin,
*Keynote Speakers*
- Eddy Arnold, Rutgers University, USA
- David Blake, NASA-AMES, USA
- Brian K. Kobilka, Stanford University, USA (Nobel Laureate 2012)
- Paul Steinhardt, Princeton University, USA
- John Walker, MRC Cambridge, UK (Nobel Laureate 1997)
- Ada Yonath, Weizmann Institute, IL (Nobel Laureate 2009)
*Travel Grants or Free Registrations will be available for Young
Scientists*
*Under the Patronage of*
- Italian Association of Crystallography (AIC)
- European Crystallographic Association (ECA)
- International Union of Crystallography (IUCr)
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Date: Wed, Apr 2, 2014 at 1:16 PM
Subject: Bi-Monthly News from NIMBioS
Bi-Monthly News from the National Institute for Mathematical and
Biological Synthesis (NIMBioS)
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Date: Mon, Apr 7, 2014 at 7:45 AM
Subject: 10 PhD studentships: King's College London
EPSRC Centre for Doctoral Training in Cross-Disciplinary Approaches
to Non-Equilibrium Systems (CANES)
10 fully-funded 4-year PhD studentships at King's College London
Apply by 28 April 2014 for Sept 2014 entry (late consideration
possible)
Non-equilibrium processes underpin many challenging problems across
the natural sciences. The mission of CANES is to train a new
generation of researchers in cross-disciplinary approaches to
non-equilibrium systems, focussing on the three key strands of
theoretical modelling, simulation and data-driven analysis
(see
ow.ly/vqCPG). It draws on a broad range of supervisor expertise
in Mathematics, Physics, Chemistry, Informatics, Computational and
Systems Biomedicine, Earth and Environmental Sciences, including
partners at Imperial College London, University College London and
Queen Mary London.
The training programme consists of a first year combining taught
courses and research projects, leading to the award of an MSc. In
years two to four, the programme will include open question sandpits,
master classes, journal clubs and an annual retreat. Students will
also be able to undertake internships at a broad range of industrial
and international academic partners.
Funding for CANES students covers course fees, a stipend for living
expenses (£15,863 per year), and conference travel and internship
funds. The programme can support UK applicants as well as a limited
number of students from the EU and overseas.
Applications are now invited from candidates with excellent
undergraduate or equivalent qualifications in any relevant discipline
including mathematics, physics, chemistry, engineering, materials
science, biophysics, geophysical sciences and computer science. A
strong background in quantitative science will be essential for
students to take full advantage of the CANES training programme.
apply.
Interested candidates should apply by 28 April 2014. Applications
received after this date will be considered as long as places remain.
Informal enquiries can be addressed to the CANES Director, Prof.
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Date: Wed, Apr 2, 2014 at 8:54 AM
Subject: Postdoc Position: Newcastle University
EPSRC Lead Modeller. The link to the vacancy is as follows:
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Date: Thu, Apr 3, 2014 at 6:14 AM
Subject: Postdoc Position: University of Ottawa
Postdoc position: Mathematical modeling of HIV, University of Ottawa
Applications are invited for a postdoctoral position in Mathematical
Biology at the University of Ottawa. The postdoc will work with
Frithjof Lutscher (Mathematics, Ottawa) and Neil Andersson (Medicine,
McGill, Montreal) to model the effectiveness of structural
interventions in the HIV epidemic in Africa. The position is funded
prevention trials in Botswana and other countries. Candidates with
a strong background in mathematical modeling and analysis are
encouraged to apply. Previous experience with disease modeling,
multigroup models, and/or individual-based models is an asset.
Requirements are a PhD in mathematics, applied mathematics or a
related field and motivation to pursue interdisciplinary,
health-related research. The position starts in Fall 2014 or as
soon as possible thereafter. The initial appointment is for one
year with the possibility of extension for a second year, depending
on performance. The postdoc is expected to teach one course per year
(on average) in mathematics at the University of Ottawa. More
information about the department can be found at
Employment equity is university policy and the university strongly
encourages applications from women, aboriginal peoples, members of
visible minorities and persons with disabilities.
the Capital of Canada. It has a vibrant, bilingual scientific
community with great opportunity for collaboration and inspiration
between mathematics and life and health sciences. The city of Ottawa
offers great cultural amenities and outdoor opportunities.
To apply, please submit a single pdf file containing your CV
together with a statement of research interests and names of three
applicants will begin May 1, 2014 and continue until the position
is filled.
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Date: Thu, Apr 3, 2014 at 1:45 PM
Subject: Postdoc Position: University of Rochester
A postdoctoral position in bioinformatics and/or computational
biology is immediately available in the Department of Biostatistics
and Computational Biology, University of Rochester School of
Medicine and Dentistry, USA.
The work involves the development and applications of cutting-edge
mathematical, statistical and bioinformatic methods and tools to
analyze multi-scale high-throughput data (image streams, genomics,
and proteomics etc.), aiming at understanding virus (especially HIV
and influenza) infection and drug treatment.
The ideal candidate will have a PhD with a strong background in
statistics, bioinformatics, biophysics, biochemistry, computational
science or similar. Additional knowledge and experience in molecular
biology, immunology, and high-throughput omics data is desirable.
Skills of modeling and analyzing DNA/RNA sequences and large-scale
dynamic networks (e.g., using ODE or DBN) are preferred. As a team
player involved in multi-disciplinary researches, strong
interpersonal and communication skills are essential. The
postdoctoral appointment is one year with possible renewal for
more years subject to performance.
University of Rochester is an AA/EOE employer. Applications from
women and minorities are encouraged to apply. Please send your CV,
three references and other supporting materials to
C/O: Ms. Susan DiVincenzo (Job Code: bioinformatics-postdoc)
Department of Biostatistics and Computational Biology,
University of Rochester School of Medicine and Dentistry,
601 Elmwood Avenue, Box 630,
Rochester, NY 14642.
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Date: Fri, Apr 4, 2014 at 10:52 AM
Subject: Postdoc Position: University of Notre Dame
We invite applications for an NIH funded postdoctoral research position
in the mathematical and computational biology group in the Department
of Applied and Computational Mathematics and Statistics (ACMS),
University of Notre Dame. We are aiming to develop novel, multi-scale
computational models to study bacterial swarming, biofilms and blood
clot formation. Models will be calibrated using experimental data.
Priority will be given to candidates with research interests and
experience in biological modeling and parallel implementation of
computational models. The salary is competitive. This position is
for 1 year with possible extension to a second year. Applications,
including curriculum vitae, should be sent electronically to Mark
least three letters of recommendation to be sent to the same email
address. The evaluation of candidates will begin immediately and
continue until the position is filled.
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Date: Sun, Apr 6, 2014 at 8:15 AM
Subject: Postdoc in NYC: Developmental Systems Biology
Postdoc in NYC: Developmental Systems Biology
The Bao lab at the Memorial Sloan Kettering Cancer Center is looking
for a postdoctoral fellow in the area of computational and systems
biology. Over the years we have established novel approaches for cell
lineage based systematic single-cell analysis of development, using
live imaging, automated cell tracking and quantitative phenotype
analysis (see Cell 2014 156:359-72; Development 2013 140:3266-74).
Recently, we have conducted a genome-wide study of conserved and
essential genes in C. elegans. We have knocked down 200 genes by
RNAi and imaged over 3,000 embryos throughout embryogenesis. We are
looking for a self-motivated individual to drive the next phase of
data analysis in this project. Areas of interest include robustness
of morphogenesis, mechanisms of developmental noise control by the
cellular network, and integrated modeling. Specific projects can be
tailored based on individual expertise and interest. Please email
cover letter, CV, and contact information for three references to
baoz@mskcc.org. MSKCC provides strong support for postdoctoral fellows
and their families, including competitive salary, housing, childcare
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Date: Wed, Apr 2, 2014 at 8:58 PM
Subject: Postdoc Position: University of Tokyo
Postdoctoral fellowship in theoretical epidemiology of infectious
diseases (Graduate School of Medicine, The University of Tokyo, Tokyo)
Starting Date: Negotiable (preferably July -- September 2014)
Job details: Infectious Disease Epidemiology Unit, School of
International Health, Graduate School of Medicine, The University
of Tokyo invites applications for postdoctoral fellowship position
in theoretical epidemiology of infectious diseases. We are looking
for candidates with strong interests and demonstrated expertise in
mathematical modeling in epidemiology or statistical analysis of
epidemic data.
The successful candidate will work on mathematical modeling studies
of vaccination, analyzing empirical datasets and implementing
analytical and numerical studies. In particular, he/she will work on
(i)epidemiological modeling of the indirect effect of vaccination and
(ii) optimization and evaluation of a routine immunization schedule.
Whereas the main focus will be on mathematical modeling of
vaccination, the successful candidate will also have opportunities
to be engaged in quantitative modeling studies and analyze various
empirical datasets of infectious diseases.
Applicants should possess PhD degree in a related area or have an
equivalent track record in research. He/she should also possess
outstanding record of peer-reviewed publications in international
journals, and sufficient background in applied mathematics, statistics,
stochastic process or computer science to conduct project studies
with senior researchers.
The salary will commensurate with the candidate's qualifications and
experience. The position is for an initial fixed-term for up to two
years. Re-engagement thereafter is subject to mutual agreement.
Health and medical insurance is provided.
The University of Tokyo is the leading research institute in Japan.
Infectious disease epidemiology unit handles a variety of mathematical
modeling subjects aiming to improve our understanding in the
transmission and persistence of infectious diseases and offer practical
insights into infectious disease epidemiology including optimal
intervention strategies.
Applications and Contact information: For details of the position,
please contact Dr Hiroshi Nishiura, by phone: +81 3 5841 3688, or
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Subject: SMBnet Reminders
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