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Subject: SMB Digest v12i28
SMB Digest July 11, 2012 Volume 12 Issue 28
ISSN 1086-6566
Editor: Richard Schugart richard(dot)schugart(at)gmail(dot)com
Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
http://www.smb.org/ .
Access the Bulletin of Mathematical Biology, the official journal of
SMB, at http://www.springer.com/11538 .
Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org .
Issue's Topics:
Symposium: The Complex Life of mRNA, Oct 7-10, EMBL, Heidelberg
Conference: Evolution & Ecology Using Yeast, Oct 17-21, EMBL
Workshop: Math Models of Tumor-Immune..., Jan 7-10, Sydney
Marie Curie PhD Positions: Computational Neuroscience, Florence
PhD Studentship: Math Physiology/Dynamical Systems, U Auckland
Post-doc: CNS Dynamical Analysis, Bethesda, MD
Genomics Database Scientist: Botany & Plant Path., Oregon St U
SMBnet Reminders
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From: EMBL Events <events@embl-events.de>
Date: July 7, 2012 3:17:51 AM
Subject: Symposium: The Complex Life of mRNA, Oct 7-10, EMBL, Heidelberg
EMBO|EMBL Symposium:
The Complex Life of mRNA
7-10 October 2012
EMBL Heidelberg
Abstract submission deadline is 2 August 2012.
Registration and payment deadline is 23 August 2012.
http://www.embo-embl-symposia.org/symposia/2012/EES12-03/index.html
----------------------------------------------------
From: EMBL Events <events@embl-events.de>
Date: July 10, 2012 6:41:47 AM
Subject: Conference: Evolution & Ecology Using Yeast, Oct 17-21, EMBL
EMBO Conference Series:
Experimental Approaches to Evolution and Ecology Using Yeast
17-21 October 2012
EMBL Heidelberg
Abstract deadline is 16 August 2012.
Registration deadline is 30 August 2012.
http://www.embl.de/training/events/2012/EAE12-01/
----------------------------------------------------
From: AMINA ELADDADI <eladdada@mail.strose.edu>
Date: July 10, 2012 1:23:12 PM
Subject: Workshop: Math Models of Tumor-Immune..., Jan 7-10, Sydney
US- Sydney International Workshop on Mathematical Models of
Tumor-Immune System Dynamics, January 7-10, 2013, Australia
Website: https://sites.google.com/site/sydneytumorimmune
We are pleased to announce a four-day workshop on Mathematical
Models of Tumor-Immune System Dynamics to be held at the University
of Sydney, Australia from January 7th to January 10th, 2013.
Recent progress in cancer immunology and the advances in immunotherapy
suggest that the immune system plays a fundamental role in host defense
against tumor, and could be utilized to prevent or cure cancer. The
multidimensional nature of these complex interactions requires
cross-disciplinary approaches to capture more realistic dynamics of the
essential biology. This international workshop will provide a joint
forum for leading applied mathematicians, biologists and clinicians
actively working in the field of cancer immunology in order to exchange
ideas, advance the knowledge of research in this field by rising
awareness of the available innovative mathematical tools in cancer
systems biology, and explore opportunities for collaborative exchange
and education between the Asia Pacific, European, African and North
American countries.
The workshop will include plenary lectures by leading researchers in
tumor-immune system dynamics, parallel sessions of contributed/invited
talks by senior and junior scientists, a poster session for graduate
students, and a panel discussion on how to foster and sustain
international collaborations in this highly multidisciplinary field of
cancer immunology.
Our Keynote Speaker: Distinguished Prof. Avner Friedman, Mathematical
Biosciences Institute, The Ohio State University, USA
Confirmed Plenary Speakers:
Gib Bogle, Auckland Bioengineering Institute, The University of
Auckland, NZ
Lisette de Pillis, Harvey Mudd College, USA
Marcello Delitala, Politecnico di Torino, Italy
Trachette Jackson, University of Michigan, USA
Doron Levy, University of Maryland, USA
Dr. Adekunle "Kunle" Odunsi, Roswell Park Cancer Institute, USA
Ami Radunskaya, Pomona College, USA
Sarah Russell, Peter MacCallun Cancer Centre, Australia
Chris Schmidt, Queensland Institute of Medical Research, Australia
We look forward to welcoming you at Sydney International Workshop on
Mathematical Models of Tumor-Immune system Dynamics in January 7-10,
2013.
Financial Support will be available for US-based scholars from NSF
(pending). We strongly encourage the participation from women and
minorities, PhD students, post-docs, and junior researchers.
For more information please check the workshop website:
https://sites.google.com/site/sydneytumorimmune
Abstract submission is now open. Please use this link to submit your
abstract: http://atlas-conferences.com/cgi-bin/abstract/cbff-01
The workshop organizing team:
Amina Eladdadi, The College of Saint Rose, Albany, NY
Peter Kim, The University of Sydney, Australia
Dann Mallet, Queensland University of Technology, Australia
----------------------------------------------------
From: Alessandro Torcini <alessandro.torcini@cnr.it>
Date: July 8, 2012 9:17:53 AM
Subject: Marie Curie PhD Positions: Computational Neuroscience, Florence
Two fully funded PhD fellowships (Early Stage Researcher) in
Computational Neuroscience
http://neuro.fi.isc.cnr.it/index.php?page=marie-curie-itn
1. Emergence of collective dynamics in scale-free neuronal networks
(ESR14)
2. Measures of spike train synchrony (ESR15)
within the Marie Curie Initial Training Network - 'Neural Engineering
Transformative Technologies' (NETT) at the Institute of Complex Systems
(ISC), CNR, Florence, Italy.
Gross Salary per annum: 42,028 euros (Living Allowance) plus 9,290 -
13,272 euros (Mobility Allowance) depending on circumstances
Required titles: MSc in Physics, Mathematics or Engineering
Applications: The applications should be prepared and send as detailed
on this webpage:
http://neuro.fi.isc.cnr.it/index.php?page=how-to-apply
Closing date for both positions: 1 September 2012
Applications are invited for the above posts to work with Dr Alessandro
Torcini and Dr Thomas Kreuz in the Computational neuroscience group at
ISC, Florence. This world leading group combines theoretical
investigations (e.g., on nontrivial collective phenomena in neuronal
populations) with practical applications (e.g., spike train analysis).
The group is one of the main participants in the Center for the Study of
Complex Dynamics (CSDC) created with the purpose of coordinating
interdisciplinary training and research activities. CSDC researchers
include physicists, control engineers, mathematicians, biologists and
psychologists. Both full-time posts are available from 01 January 2013
and will be offered on a fixed-term contract for a period of 36 months.
The two successful candidates will register for a 3 year PhD degree at
the University of Florence in Information Technology, Systems and
Telecommunication (Course on Nonlinear Dynamics and Complex Systems).
Candidates must be in the first 4 years of their research careers and
not been awarded a doctorate degree. Preference will be given to
candidates with experience in mathematical and computational
neuroscience. As part of our commitment to promoting diversity we
encourage applications from women. To comply with the Marie Curie
Actions rule for mobility applicants must not have resided, worked or
studied in Italy for more than 12 months in the 3 years prior to Sept
2012. The fellowships will include international internships so the
candidates must be able to move between countries as necessary.
1. Marie Curie Actions Early Stage Researcher (PhD fellowship)
Emergence of collective dynamics in scale-free neuronal networks (ESR14)
The successful candidate will work within the framework of nonlinear
dynamics and computational neuroscience. His/her main task will be the
study of the macroscopic and microscopic evolution of neural networks
with various topologies. In particular, he/she should analyze the
robustness of collective solutions in presence of an external feedback.
One of the main tasks will be the development of efficient numerical
codes to simulate the networks' dynamics and to develop tools to analyze
their macroscopic properties. This fellowship includes a three-month
secondment working with either Prof Stephen Coombes at the School of
Mathematical Sciences in Nottingham, UK, or Prof Jordi Garcia-Ojalvo in
the Department of Physics and Nuclear Engineering, Universitat
Politecnica de Catalunya, Spain. It also includes a three-month
internship with the project industrial partner, bioPmed in Piemonte near
Turin, Italy.
The candidates should have a strong background in at least one of the
following fields: nonlinear dynamics, statistical physics or
computational neuroscience as well as solid experience in scientific
programming (with languages Fortran and/or C).
Informal enquiries should be addressed to Dr Alessandro Torcini
(alessandro.torcini@cnr.it).
2. Marie Curie Actions Early Stage Researcher (PhD fellowship)
Spike train analysis from neuronal networks (ESR15)
The successful candidate will work within the framework of computational
neuroscience and signal processing. His/her main task will be the
analysis of electrophysiological data, in particular recordings of
single- and multi-unit spike trains as well as local field potentials
and EEG all of which will be provided by the international partner
institutions. One of the principal objectives will be the improvement of
methods to estimate spike train synchrony and in particular the
development and extension of a Matlab toolbox for spike train analysis.
Furthermore, the candidate will help to adapt other nonlinear time
series analysis tools to the specific needs of the collaborating nodes
in the Netherlands, France, Portugal, Spain, and the UK. This fellowship
includes a three-month secondment to either Dr Simon Schultz in the
Department of Bioengineering at Imperial College London, UK or Prof Bert
Kappen at the Radboud University Nijmegen, Netherlands. It also includes
a three-month internship in the third year with the project industrial
partner, bioPmed in Piemonte near Turin, Italy.
The candidate should have a strong background in computational
neuroscience and data analysis as well as solid experience in
programming (Matlab).
Informal enquiries should be addressed to Dr Thomas Kreuz
(thomas.kreuz@cnr.it).
In order to apply please follow the detailed indications provided on
this webpage: http://neuro.fi.isc.cnr.it/index.php?page=how-to-apply
----------------------------------------------------
From: Vivien Kirk <v.kirk@auckland.ac.nz>
Date: July 8, 2012 7:49:02 PM
Subject: PhD Studentship: Math Physiology/Dynamical Systems, U Auckland
PhD studentship, Mathematical Physiology and Dynamical Systems
Department of Mathematics, The University of Auckland
Closing date: 15th August, 2012
One PhD studentship is available in the Department of Mathematics at the
University of Auckland to work on a project in dynamical systems and
mathematical physiology, looking at techniques for analysis of
mathematical models with multiple timescales with particular application
to models of intracellular calcium dynamics and of neurons. This work is
part of a larger project looking at techniques for rigorous construction
and analysis of reduced models of physiological systems and involving
the researchers James Sneyd, Hinke Osinga, and Vivien Kirk at the
University of Auckland, and Martin Wechselberger at the University of
Sydney.
A good background in dynamical systems and scientific programming is
desirable.
Stipend is NZ$25,000 pa (tax free) for three years plus tuition fees.
Interested candidates should send an email expressing their interest,
along with a CV and academic record, to Dr Vivien Kirk at
v.kirk@auckland.ac.nz
----------------------------------------------------
From: Rapp, Paul <paul.rapp@usuhs.edu>
Date: July 8, 2012 6:15:49 PM
Subject: Post-doc: CNS Dynamical Analysis, Bethesda, MD
Traumatic Brain Injury Research
Computational Physics/Applied Mathematics
The Henry M. Jackson Foundation is seeking a Computational
Physics/Applied Mathematics Post-doctoral Fellow in the Traumatic Injury
Research Program at the Uniformed Services University. This research
program is directed to the development of improved methods for the
diagnosis and longitudinal assessment of mild traumatic brain injury
based on the dynamical analysis of EEGs (electroencephalograms) and
event related potentials (ERPs), with an emphasis on event related
inter-regional synchronization. A focus of the program is the
investigation of mild traumatic brain injury that progresses to a
clinical presentation of depression or post traumatic stress disorder.
The Traumatic Injury Research Program is based in the Department of
Military and Emergency Medicine. Its facilities include a
state-of-the-art EEG/ERP laboratory.
The post-doctoral fellow will participate in the construction and
validation of signal processing software, direct the analysis of EEGs
and ERPs and contribute to the preparation of these results for
publication. Specific mathematical methods used in this project include
time-frequency analysis, time-dependent measures of multichannel phase
synchronization, nonlinear measures of dynamical behavior, signal
classification, information theory (including measures of complexity)
and the identification of causal relationships. An applicant's technical
training should include numerical analysis (optimization, numerical
solution of differential equations, time-frequency analysis, and signal
classification) and higher level programming languages. Extensive
experience in at least one of the following is essential: Matlab, C/C++
or Fortran. This individual will prepare written documentation of
software developed in this project and will participate in presenting
results at scientific meetings and in staff training. Effective
communication skills (written and spoken English) are therefore
essential.
The position is available under the direction of Professor Paul E. Rapp,
Director, Traumatic Injury Research Program, Department of Military and
Emergency Medicine. Further information about this research program can
be found on http://www.usuhs.mil/mem/tirp.html.
The Uniformed Services University of the Health Sciences is the US
Department of Defense's medical school. It is located in Bethesda,
Maryland across Wisconsin Ave from the main campus of the National
Institutes of Health. In addition to awarding medical degrees, the
University has graduate programs in the life sciences including
neuroscience, medical and clinical psychology, and public health.
Please apply on-line at www.hjf.org/careers. Please click on Advanced
Search and enter the job number 207354 in the Job Opening ID box or fax
your resume to 240-694-3151. Please specify title and job number on fax.
The Foundation is a nonprofit medical research organization that provides
support services to the military medical community and offers a
competitive salary and generous benefits package. Salary is commensurate
with experience. AA/EEO.
----------------------------------------------------
From: Cropley, Jeannine <Jeannine.Cropley@cgrb.oregonstate.edu>
Date: July 9, 2012 6:10:49 PM
Subject: Genomics Database Scientist: Botany & Plant Path., Oregon St U
GENOMICS DATABASE SCIENTIST Position
Genomics Database Scientist (Faculty Research Assistant), Oregon State
University's (OSU) Botany and Plant Pathology department ? Center for
Genome Research and Biocomputing (CGRB). Full time + benefits.
Responsibilities and duties include develop research software
forFungiDB; curate, analyze and load research data for the FungiDB
project; communication with FungiDB developers at UCR and EuPathDB
developers at U Penn to implement the research goals. The appointee
will be located for the first year at the University of California,
Riverside and thereafter at Oregon State University. To review posting
and apply, go to http://oregonstate.edu/jobs posting number 0009312.
Closing Date: 08/09/12 at 11:59 pm. OSU is an AA/EOE.
----------------------------------------------------
Subject: SMBnet Reminders
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End of SMB Digest
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