Subject: SMB Digest v12i17
SMB Digest April 25, 2012 Volume 12 Issue 17
ISSN 1086-6566
Editor: Amina Eladdadi eladdada(at)strose(dot)edu
Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
Access the Bulletin of Mathematical Biology, the official journal of SMB, at
Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org .
Issue's Topics:
Mentoring Program at the 2012 SMB Meeting
Workshop on Scale Transitions in Chemistry & Biology, June 4-8, UK
PhD Studentship: Modeling Species Invasions, CMB U. of Oxford
Postdoc: Computational Systems Biology/Neuroscience, George Mason U.
Postdoc: Multivariate Dynamics of Cancer Cell Signaling, Denmark
Postdoc: Software Development for Reaction-Diffusion Modeling, Oxford
Postdoc: Math Modeling & Simulations in Epidemiology, Tel Aviv U.
Lecturer in Mathematical/Statistical Informatics, Nottingham
Lecturer/Senior Lecturer in Mathematics, Nottingham
SMBnet Reminders
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Date: Tue, Apr 24, 2012 at 1:20 PM
Subject: Mentoring Program at the 2012 SMB Meeting
Applications are being accepted for mentors and mentees to participate
in the mentoring program at the SMB annual meeting in Knoxville,
July 2012.
Following the successful mentoring program at previous annual
meetings, we are again offering a mentoring program for the benefit of
junior scientists attending the 2012 Annual Meeting. The goal of this
program is two-fold:
* to optimize the educational and professional experience of mentees
attending the conference;
* to assist the mentees' socialization into the field of
mathematical biology.
Participants may register as a mentor or mentee or both. The deadline
for applications is June 25th, 2012. Further details including how to
register are available online at:
Caroline Bampfylde & Renee Fister
SMB Mentoring Committee
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Date: Tue, Apr 24, 2012 at 12:35 PM
Subject: Workshop on Scale Transitions in Chemistry & Biology, June
4-8, Edinburgh, UK
Workshop on Scale Transitions in Chemistry & Biolog, June 4-8, 2012,
Posgraduate Conference on Multiscale Modelling and Techniques, 6 June
2012, ICMS, Edinburgh, UK
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Date: Thu, Apr 19, 2012 at 10:16 AM
Subject: PhD- Modeling Species Invasions, CMB U. of Oxford
Modeling Species Invasions in Fragmented Landscapes:
Applications are invited for a multidisciplinary postgraduate doctoral
studentship to work on modeling species invasions in fragmented
landscapes under the supervision of Dr Eamonn Gaffney (Centre for
Mathematical Biology (CMB), University of Oxford), Dr Steven White
(NERC Centre for Ecology & Hydrology (CEH); CMB) and Prof James
Bullock (CEH). The studentship will start no later than 1st October
2012 and will be based in the CMB, within The University of Oxford?s
Mathematical Institute and will also be attached to Brasenose College.
In this project, the student will develop and analyse mathematical
models to investigate the role that habitat fragmentation will have on
plant species invasions. Specific topics that might be addressed
include: (1) the development of theory on wavespeeds for
stage-structured integro-difference equations in periodic landscapes;
(2) the effect of multi-habitat landscapes on species invasions; (3)
the effect of stochastic landscapes on species invasions; (4)
transient dynamics theory; (5) investigating the role of density
dependence in species invasions; and (6) multiple interacting species
invasions. Throughout, the student will use a combination of
analytical (stability analysis, asymptotics etc) and simulation
techniques (in Matlab, Fortran etc).
The funding is at standard NERC rates and is suitable for UK or
EU-eligible students (fees and stipend) or other EU students (fees
only).
This studentship falls outside the University?s Gathered Field process
and is ideally suited to a candidate with, or finishing, a degree in
mathematics, statistics, theoretical ecology or a related quantitative
subject. Applications should be made online at
CV, covering letter, a list of three referees and a transcript of your
undergraduate degree. If you are unable to apply online, you can
Applications must arrive by the end of the day on Thursday 17th May
2012, with interviews scheduled for Monday 28th May; please ensure you
quote the correct reference BK/12/05 in your covering letter. Referees
should send references using the online system, but if they have any
problems, they may e-mail them directly to the Graduate Studies
Further details about the application process may be obtained from the
further details concerning the project can be found at
The CMB was founded in 1983 with the mission to foster
interdisciplinary research in the (then new) area of mathematical
biology. It houses the editorial office of the Bulletin of
Mathematical Biology and its members have played key roles in building
a national and international research community of mathematical
biologists. It played a leading role in building a cross-disciplinary
research culture with biosciences within Oxford, in the establishment
of the Oxford Centre for Integrative Systems Biology and in
establishing collaborations worldwide. CEH is the UK's Centre of
Excellence for integrated research in terrestrial and freshwater
ecosystems and their interaction with the atmosphere. As part of
the Natural Environment Research Council (NERC), CEH provides National
Capability based on innovative, independent and interdisciplinary
science and long-term environmental monitoring, forming an integral
part of NERC's vision and strategy.
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Date: Wed, Apr 18, 2012 at 8:49 AM
Subject: Postdoc-Computational Systems Biology/Neuroscience, George
Mason University
George Mason University, Krasnow Institute for Advanced Study invites
applications from outstanding candidates for a Postdoctoral Research
position available immediately, to contribute to ongoing cutting-edge
research in computational systems biology/neuroscience, funded by the
National Institutes of Health (NIH) through the National Institute of
Alcohol Abuse and Alcoholism.
One project involves development of large scale models of signaling
pathways underlying synaptic plasticity. The other project involves
further development of stochastic algorithms for computationally
efficient simulation of reaction diffusion systems, and coupling these
algorithms to neuronal simulation software such as Moose and Genesis.
The incumbent will be part of a research collaboration with
experimentalists studying synaptic plasticity using electrophysiology,
molecular biology and live cell imaging techniques. Recent
publications are listed below. The candidate also will join the Center
for Neural Informatics, Structures, and Plasticity -- an
interdisciplinary, dynamic and creative research group at the Krasnow
Institute for Advanced Study, located in northern Virginia (15 miles
west of Washington, D.C.).
All highly motivated candidates with recent Ph.D.s in relevant fields
(e.g., biology, computer science, physics, bioinformatics,
engineering, chemistry) are encouraged to apply. At least one
publication in a refereed journal is required. Research experience
with programming languages (e.g., C++, JAVA), modelling packages
(e.g., XPPAUT, Genesis) and knowledge of diffusion and stochastic
processes is highly desirable.
F8815Z, with resume, (p)reprints, a one-page description of your
motivation and three recommendation letters. Also send an email to
Review of applications will continue until positions are filled.
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Date: Wed, Apr 18, 2012 at 2:00 PM
Subject: Postdoc in Multivariate Dynamics of Cancer Cell Signaling
The Cellular Signal Integration Group (C-SIG),
at the Department of Systems Biology at the Technical University of
Denmark (DTU). Our department represents one of the largest network
biology centers in academia and has a highly multi-disciplinary
profile. In our lab, we explore biological systems by developing and
deploying algorithms aimed at predicting cell behavior with accuracy
similar to that of weather or aircraft models. Our focus is on
studying cellular signal processing and decision-making.
Job description: A postdoc position is available in Professor Dr Rune
Linding?s lab. Professor Linding is a world-leading network biologist
whose laboratory is interested in the mechanisms by which cells use
signaling networks to respond and adapt to changes in their
environment. We are seeking highly motivated, bright researchers to
join our highly dynamic, productive and stimulating lab. In this
position, the successful applicant will work in a fast-paced dynamic
environment, performing studies to advance research into biological
and complex systems in order to develop new understanding of evolution
and therapies of human diseases. We are seeking an experienced and
motivated postdoc to work on a project related to our recent studies
on phosphorylation networks (Bakal, Linding et al. Science 2008, Tan
et al. Science 2009and 2011, Tan et al. Science Signaling 2009 and
Jorgensen et al. Science 2009). We will use our previously established
JNK network as a basis to systematically investigate dysregulation of
this network in cancer by combining computational modelling with
quantitative phospho-proteomics and high-throughput imaging. The
project involves a collaboration with Prof Doug Lauffenburger?s lab at
MIT (Boston, USA).
Qualifications: Candidates must hold a PhD degree in systems biology,
biological engineering or another relevant field, and have experience
in computational modeling. Experience in mammalian tissue culture,
cell imaging, signal transduction, quantitative proteomics or
phospho-proteomics is a distinct advantage. The post-holder must be
keen to generate, analyze and computationally integrate large-scale
quantitative data to reach a deeper understanding of the data at hand.
Salary and terms of employment: The postdoctoral salary in Denmark is
one of the best world-wide and foreign researchers will be able to
enter the country on a low tax rate (26%), while remaining fully
eligible for all public services of the Danish well-fare society. The
candidate will receive a high monthly retirement supplement in
addition to the salary.
The appointment will be based on the collective agreement with the
Confederation of Professional Associations, and the relevant union
negotiates the allowance.
The period of employment is 2-3 years with the possibility of
extension.
DTU offers: The C-SIG lab is part of the Center for Biological
Sequence Analysis (CBS) at the Technical University of Denmark
(DTU). CBS represents one of the largest systems- and computational
biology centers in academia and has a highly multi-disciplinary
profile. DTU strives for academic excellence, collegial respect and
freedom tempered by responsibility. DTU is a leading technical
university in Europe and ranks with the best universities in the
world. We offer a highly attractive salary and the opportunity to take
part in a frontier research program combating cancer.
Further information may be obtained from Prof Rune Linding,
Do NOT send applications to this e-mail address, but use the
electronic submission system - see below!
You can read more about the Center for Biological Sequence Analysis on
Application procedure: we must have your online application by 15 May
2012. To apply, please open the link "apply for this job online" below
and fill in the application form and attach your application, CV and
diploma. The material that should be given consideration in the
assessment must be attached. Applications should be submitted in
English. Applications and enclosures received after the deadline
will not be considered.
All interested candidates irrespective of age, gender, race,
disability, religion or ethnic background are encouraged to apply.
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Date: Sun, Apr 22, 2012 at 11:47 AM
Subject: Postdoc-Software Development for Reaction-Diffusion Modeling
Mathematical Institute, University of Oxford
2 Year Postdoctoral Research Position
Software development for reaction-diffusion modeling
We invite applications for a postdoctoral research position (software
developer) to work with Dr Radek Erban at the Mathematical Institute,
University of Oxford. This position, funded by the John Fell Oxford
University Press (OUP) Research Fund, is available from 1st July 2012
(or as soon as possible thereafter) for 2 years.
The main goal of this work is to develop computer software which is
able to accurately and efficiently use reaction-diffusion models with
different levels of detail in different parts of the computational
domain. The successful applicant (software developer) will collaborate
with members of the group of Dr Erban who work on the development of
multiscale algorithms in this area. We will also collaborate with Dr
Steve Andrews (Seattle, USA) and Prof Per Lotstedt (Uppsala, Sweden).
Funding for visits of the postdoc to Seattle and Uppsala is included
in the grant. The developed reaction-diffusion software will, as much
as possible, make use of successful software projects which have
already been developed in the scientific community.
Applicants should read the job description document before writing
their application:
Applications for this vacancy are to be made online. You will be
required to upload a letter setting out how you meet the selection
criteria (listed on page 5 of the job description document), a
curriculum vitae including full list of publications and the contact
details of two referees as part of your online application.
Applicants should ask their referees to send their letters of
reference directly to the Administrative Assistant
reference 102766. Interviews for this position will be held at the end
of May (telephone interviews are possible). Only applications received
before 12:00 noon UK time on Friday 18th May 2012 can be considered.
To apply for this post and for further details please click on the
link below:
Closing date: Friday, 18th May 2012
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Date: Mon, Apr 23, 2012 at 2:31 PM
Subject: Postdoc-Math Modeling & Simulations in Epidemiology, Tel Aviv
The BioMathematics Unit of the Faculty of Life Sciences at Tel Aviv
University invites applications for a theoretical Postdoc Fellowship,
ideally beginning as soon as July, 2012. The Fellow will work on
mathematical modeling and computer simulations mostly related to
epidemiology. The successful candidate will be free to employ any
preferred methodology relevant to the study of the spread of disease
e.g. network theory, lattice models, nonlinear dynamics, statistical
data analysis, analytical models etc. The work will bring together
scientists from different research fields.
The candidates must have a Ph.D. degree in either Physics,
Mathematics, Computer Science or any equivalent field of technical
study that have given competence in Mathematical/computational
modeling of complex, dynamical systems in Biology. The appointment is
initially for one year, and is renewable for up to 3 years. There
are no teaching duties, however, part of the duties include active
involvement in group meetings and seminars, as well as training
graduate and undergraduate students. Any inquiries should be addressed
The application should contain an updated CV, a short research
statement with at a least two letters of reference. The deadline for
application is May 21, 2012, but review of applications will
continue until the position is filled.
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Date: Sun, Apr 22, 2012 at 4:16 PM
Subject: Lecturer in Mathematical/Statistical Informatics, Nottingham
Lecturer in Mathematical/Statistical Informatics University of
Nottingham - School of Mathematical Sciences
Reference: CE07719S
Closing Date: Friday, 18th May 2012
Applications are invited from outstanding candidates for the above
post. The successful candidate will be expected to contribute
strongly to maintaining and enhancing the School?s high standards in
teaching and research. Candidates should have a commitment to
high-quality teaching in service and honours mathematics to a broad
range of students.
At the University of Nottingham, the School of Mathematical Sciences
was ranked 8th nationally by Research Power in the 2008 RAE. The
successful candidate will be expected to contribute to maintaining and
enhancing our research record. While the field is to be interpreted
in a broad sense, the School is particularly interested in receiving
applications from candidates with research interests in the
development of innovative mathematical tools for the analysis of large
datasets emerging from a variety of fields (including systems biology
and medicine, and the digital economy), and with relevant expertise,
in areas such as stochastic modelling, statistical inference and
network modeling. There is significant potential to establish
collaborations with colleagues within the University involved in data
production (notably from the various Schools of biology and medicine)
and complementary techniques of data analysis (such as Computer
Science).
Candidates should hold a PhD or equivalent in mathematics, statistics
or a related subject and have demonstrated potential for research of
international quality that complements existing activity within the
School. As part of our commitment to promoting diversity we encourage
applications from women.
Salary: £32901 to £44166 per annum (pro rata for part-time), depending
on skills and experience. Salary progression beyond this scale is
subject to performance.
This full-time, permanent post is available from 1 September 2012 or
as soon as possible thereafter and is open to job share.
Informal enquiries may be addressed to Professor Andrew Wood,
Please note that applications sent directly to this email address will
not be accepted.
Information about the School is available at:
For more details and/or to apply on-line please access:
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Date: Tue, Apr 24, 2012 at 8:50 AM
Subject: Lecturer/Senior Lecturer in Mathematics
Nottingham Trent University
Lecturer/Senior Lecturer in Mathematics (S0281)
College/Department: College of Arts and Science
School/Section: School of Science and Technology
Job title: Lecturer/Senior Lecturer in Mathematics
Salary: £30,122-£44,166 p.a. (Grade H/I)
Location: Clifton campus
Closing date: 5 pm on 15 May 2012
More information:
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Subject: SMBnet Reminders
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